Protein structure prediction problem: formalization using quaternions

The authors discuss the formalization of protein tertiary structure prediction problem based on Dill’s HP-model. Three-dimensional discrete lattices and different approaches to representing paths on them are the subjects of investigation. Two ways of path encoding are proposed and formalized, one of...

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Bibliographic Details
Published inCybernetics and systems analysis Vol. 49; no. 4; pp. 597 - 602
Main Authors Hulianytskyi, L. F., Rudyk, V. O.
Format Journal Article
LanguageEnglish
Published Boston Springer US 01.07.2013
Springer
Springer Nature B.V
Subjects
Algorithms
Amino acids
Artificial Intelligence
Biophysics
Control
Cybernetics
Encoding
Energy
Euclidean space
Lattices
Mathematical analysis
Mathematics
Mathematics and Statistics
Molecular structure
Processor Architectures
Protein folding
Proteins
Quaternions
Software Engineering/Programming and Operating Systems
Studies
Systems analysis
Systems Theory
discrete lattices
quaternions
protein folding
tertiary protein structure molecule
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Summary:The authors discuss the formalization of protein tertiary structure prediction problem based on Dill’s HP-model. Three-dimensional discrete lattices and different approaches to representing paths on them are the subjects of investigation. Two ways of path encoding are proposed and formalized, one of which is based on quaternions.
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ISSN:1060-0396
1573-8337
DOI:10.1007/s10559-013-9546-8