Root angle in maize influences nitrogen capture and is regulated by calcineurin B‐like protein (CBL)‐interacting serine/threonine‐protein kinase 15 (ZmCIPK15)

• Published in: Plant, cell and environment Vol. 45; no. 3; pp. 837 - 853
• Main Authors: Schneider, Hannah M., Lor, Vai Sa Nee, Hanlon, Meredith T., Perkins, Alden, Kaeppler, Shawn M., Borkar, Aditi N., Bhosale, Rahul, Zhang, Xia, Rodriguez, Jonas, Bucksch, Alexander, Bennett, Malcolm J., Brown, Kathleen M., Lynch, Jonathan P.
• Format: Journal Article
• Language: English
• Published: United States Wiley Subscription Services, Inc 01.03.2022
• Subjects: Biomass; Calcineurin; Calcineurin - genetics; Calcineurin - metabolism; Cbl protein; computer simulation; Corn; crown root; environment; Gene mapping; genes; Genome-Wide Association Study; Genomes; Genotypes; GWAS; Kinases; mutants; New varieties; Nitrogen; Nitrogen - metabolism; Nucleotides; Nutrient requirements; phenotype; Phenotyping; phytomass; Plant biomass; Plant growth; Plant Roots - metabolism; Protein kinase; Protein Kinases - metabolism; Proteins; reverse genetics; root architecture; root growth; Serine - genetics; Serine - metabolism; Single-nucleotide polymorphism; Threonine; Threonine - metabolism; Water - metabolism; Water requirements; Zea mays - metabolism; root architecture; GWAS; phenotyping; crown root
• ISSN: 0140-7791; 1365-3040; 1365-3040
• DOI: 10.1111/pce.14135

Crops with reduced nutrient and water requirements are urgently needed in global agriculture. Root growth angle plays an important role in nutrient and water acquisition. A maize diversity panel of 481 genotypes was screened for variation in root angle employing a high‐throughput field phenotyping platform. Genome‐wide association mapping identified several single nucleotide polymorphisms (SNPs) associated with root angle, including one located in the root expressed CBL‐interacting serine/threonine‐protein kinase 15 (ZmCIPK15) gene (LOC100285495). Reverse genetic studies validated the functional importance of ZmCIPK15, causing a approximately 10° change in root angle in specific nodal positions. A steeper root growth angle improved nitrogen capture in silico and in the field. OpenSimRoot simulations predicted at 40 days of growth that this change in angle would improve nitrogen uptake by 11% and plant biomass by 4% in low nitrogen conditions. In field studies under suboptimal N availability, the cipk15 mutant with steeper growth angles had 18% greater shoot biomass and 29% greater shoot nitrogen accumulation compared to the wild type after 70 days of growth. We propose that a steeper root growth angle modulated by ZmCIPK15 will facilitate efforts to develop new crop varieties with optimal root architecture for improved performance under edaphic stress. Genome‐wide association mapping identified CBL‐interacting serine/threonine‐protein kinase 15 (ZmCIPK15) gene that controls root angle and is associated with increased deep nitrogen capture and plant performance in low nitrogen environments.