Elucidating the concentration-dependent effects of thiocyanate binding to carbonic anhydrase

• Published in: Journal of inorganic biochemistry Vol. 244; p. 112222
• Main Authors: Silva, José Malanho, Cerofolini, Linda, Carvalho, Ana Luísa, Ravera, Enrico, Fragai, Marco, Parigi, Giacomo, Macedo, Anjos L., Geraldes, Carlos F.G.C., Luchinat, Claudio
• Format: Journal Article
• Language: English
• Published: United States Elsevier Inc 01.07.2023
• Subjects: Binding Sites; Carbonic Anhydrases - chemistry; Cobalt - chemistry; EPR; Human carbonic anhydrase II; Humans; Ligands; NMR; Paramagnetism; Protein Binding; Sodium thiocyanate; Structural biology; Thiocyanates; NMR; EPR; Structural biology; Paramagnetism; Human carbonic anhydrase II; Sodium thiocyanate
• ISSN: 0162-0134; 1873-3344
• DOI: 10.1016/j.jinorgbio.2023.112222

Many proteins naturally carry metal centers, with a large share of them being in the active sites of several enzymes. Paramagnetic effects are a powerful source of structural information and, therefore, if the native metal is paramagnetic, or it can be functionally substituted with a paramagnetic one, paramagnetic effects can be used to study the metal sites, as well as the overall structure of the protein. One notable example is cobalt(II) substitution for zinc(II) in carbonic anhydrase. In this manuscript we investigate the effects of sodium thiocyanate on the chemical environment of the metal ion of the human carbonic anhydrase II. The electron paramagnetic resonance (EPR) titration of the cobalt(II) protein with thiocyanate shows that the EPR spectrum changes from A-type to C-type on passing from 1:1 to 1:1000-fold ligand excess. This indicates the occurrence of a change in the electronic structure, which may reflect a sizable change in the metal coordination environment in turn caused by a modification of the frozen solvent glass. However, paramagnetic nuclear magnetic resonance (NMR) data indicate that the metal coordination cage remains unperturbed even in 1:1000-fold ligand excess. This result proves that the C-type EPR spectrum observed at large ligand concentration should be ascribed to the low temperature at which EPR measurements are performed, which impacts on the structure of the protein when it is destabilized by a high concentration of a chaotropic agent. Paramagnetic nuclear magnetic resonance (NMR) is very sensitive to the coordination environment of a paramagnetic metal ion, and it is used here to monitor the effects of sodium thiocyanate at different concentrations on the metal coordination geometry of the cobalt-substituted human carbonic anhydrase II. [Display omitted] •SCN− affects differently NMR and EPR spectra of cobalt(II)‑carbonic anhydrase II.•1:1 SCN−:protein ratios strongly affect the NMR spectra; excess SCN− has minor effect.•1:1 SCN−:protein ratios weakly affect the EPR spectra; excess SCN− has major effects.•Circular dichroism and 15N relaxation show weak effect of excess SCN− on protein stability.