Fuzzy Complex Formation between the Intrinsically Disordered Prothymosin α and the Kelch Domain of Keap1 Involved in the Oxidative Stress Response

• Published in: Journal of molecular biology Vol. 425; no. 6; pp. 1011 - 1027
• Main Authors: Khan, Halema, Cino, Elio A., Brickenden, Anne, Fan, Jingsong, Yang, Daiwen, Choy, Wing-Yiu
• Format: Journal Article
• Language: English
• Published: England Elsevier Ltd 25.03.2013
• Subjects: Amino Acid Sequence; binding capacity; Binding Sites; calorimetry; Cell Nucleus - metabolism; cytoplasm; gene activation; Humans; hydrogen; Intracellular Signaling Peptides and Proteins - chemistry; Intracellular Signaling Peptides and Proteins - metabolism; isothermal titration calorimetry; Kelch-Like ECH-Associated Protein 1; molecular dynamic simulation; Molecular Dynamics Simulation; Molecular Sequence Data; nuclear magnetic resonance; nuclear magnetic resonance spectroscopy; Nuclear Magnetic Resonance, Biomolecular; Oxidative Stress; protein dynamics; Protein Interaction Domains and Motifs; Protein Precursors - chemistry; Protein Precursors - metabolism; Protein Structure, Tertiary; protein–protein interaction; site-directed mutagenesis; stress response; Thymosin - analogs & derivatives; Thymosin - chemistry; Thymosin - metabolism; titration; transcription (genetics); transcription factors; NOE; protein dynamics; protein–protein interaction; molecular dynamic simulation; nuclear magnetic resonance; PDB; HX; SSP; isothermal titration calorimetry; IDP; Nrf2; ProTα; MD; Keap1; ITC; HSQC
• ISSN: 0022-2836; 1089-8638
• DOI: 10.1016/j.jmb.2013.01.005

Kelch-like ECH-associated protein 1 (Keap1) is an inhibitor of nuclear factor erythroid 2-related factor 2 (Nrf2), a key transcription factor for cytoprotective gene activation in the oxidative stress response. Under unstressed conditions, Keap1 interacts with Nrf2 in the cytoplasm via its Kelch domain and suppresses the transcriptional activity of Nrf2. During oxidative stress, Nrf2 is released from Keap1 and is translocated into the nucleus, where it interacts with the small Maf protein to initiate gene transcription. Prothymosin α (ProTα), an intrinsically disordered protein, also interacts with the Kelch domain of Keap1 and mediates the import of Keap1 into the nucleus to inhibit Nrf2 activity. To gain a molecular basis understanding of the oxidative stress response mechanism, we have characterized the interaction between ProTα and the Kelch domain of Keap1 by using nuclear magnetic resonance spectroscopy, isothermal titration calorimetry, peptide array analysis, site-directed mutagenesis, and molecular dynamic simulations. The results of nuclear magnetic resonance chemical shift mapping, amide hydrogen exchange, and spin relaxation measurements revealed that ProTα retains a high level of flexibility, even in the bound state with Kelch. This finding is in agreement with the observations from the molecular dynamic simulations of the ProTα–Kelch complex. Mutational analysis of ProTα, guided by peptide array data and isothermal titration calorimetry, further pinpointed that the region 38NANEENGE45 of ProTα is crucial for the interaction with the Kelch domain, while the flanking residues play relatively minor roles in the affinity of binding. [Display omitted] ► The mechanism of binding of ProTα with the Kelch domain of Keap1 was studied. ► Results revealed fuzzy complex formation between ProTα and Kelch. ► The 38NANEENGE45 region in ProTα is crucial for interaction with the Kelch domain. ► New insight into how ProTα interacts with the Kelch domain is gained.