The domain-server : direct prediction of protein domain-homologies from BLAST search

A WWW server for protein domain homology prediction, based on BLAST search and a simple data-mining algorithm (Hegyi,H. and Pongor,S. (1993) Comput. Appl. Biosci., 9, 371-372), was constructed providing a tabulated list and a graphic plot of similarities. http://www.icgeb.trieste.it/domain. Mirror s...

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Published inBioinformatics (Oxford, England) Vol. 15; no. 4; pp. 343 - 344
Main Authors MURVAI, J, VLAHOVICEK, K, BARTA, E, PARTHASARATHY, S, HEGYI, H, PFEIFFER, F, PONGOR, S
Format Journal Article
LanguageEnglish
Published Oxford Oxford University Press 01.04.1999
Oxford Publishing Limited (England)
Subjects
Algorithms
Biological and medical sciences
Fundamental and applied biological sciences. Psychology
General aspects
Humans
Information Storage and Retrieval
Mathematics in biology. Statistical analysis. Models. Metrology. Data processing in biology (general aspects)
Protein Conformation
Proteins - chemistry
Software
Prediction
Computerized processing
Homology
Software
Web site
Molecular domain
Comparative study
Protein
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Summary:A WWW server for protein domain homology prediction, based on BLAST search and a simple data-mining algorithm (Hegyi,H. and Pongor,S. (1993) Comput. Appl. Biosci., 9, 371-372), was constructed providing a tabulated list and a graphic plot of similarities. http://www.icgeb.trieste.it/domain. Mirror site is available at http://sbase.abc.hu/domain. A standalone programme will be available on request. A series of help files is available at the above addresses.
Bibliography:ObjectType-Article-1
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ISSN:1367-4803
1367-4811
DOI:10.1093/bioinformatics/15.4.343