On‐site environmental DNA detection of species using ultrarapid mobile PCR

• Published in: Molecular ecology resources Vol. 21; no. 7; pp. 2364 - 2368
• Main Authors: Doi, Hideyuki, Watanabe, Takeshi, Nishizawa, Naofumi, Saito, Tatsuya, Nagata, Hisao, Kameda, Yuichi, Maki, Nobutaka, Ikeda, Kousuke, Fukuzawa, Takashi
• Format: Journal Article
• Language: English
• Published: Oxford Wiley Subscription Services, Inc 01.10.2021
• Subjects: Aquatic organisms; conservation genetics; Deoxyribonucleic acid; distribution; DNA; Environmental DNA; fish; Hypophthalmichthys molitrix; Information management; Laboratories; Lakes; Polymerase chain reaction; Species
• ISSN: 1755-098X; 1755-0998
• DOI: 10.1111/1755-0998.13448

Molecular methods, including those for environmental DNA (eDNA), provide essential information for biological and conservation sciences. Molecular measurements are often performed in the laboratory, which limits their scope, especially for rapid on‐site analysis. eDNA methods for species detection provide essential information for the management and conservation of species and communities in various environments. We have developed an innovative novel method for on‐site eDNA measurements using an ultrarapid mobile PCR platform. We tested the ability of our method to detect the distribution of silver carp, Hypophthalmichthys molitrix, in rivers and lakes. Our method reduced the measurement time to 30 min and provided high detectability of aquatic organisms compared to national observation surveys that use multiple fishing nets and laboratory extraction/detection using a benchtop qPCR platform. Our on‐site eDNA method can be immediately applied to various taxa and environments.