High-Yield Production of Herbicidal Thaxtomins and Thaxtomin Analogs in a Nonpathogenic Streptomyces Strain

• Published in: Applied and environmental microbiology Vol. 84; no. 11; p. e00164-18
• Main Authors: Jiang, Guangde, Zhang, Yucheng, Powell, Magan M, Zhang, Peilan, Zuo, Ran, Zhang, Yi, Kallifidas, Dimitris, Tieu, Albert M, Luesch, Hendrik, Loria, Rosemary, Ding, Yousong
• Format: Journal Article
• Language: English
• Published: United States American Society for Microbiology 01.06.2018
• Subjects: Analogs; Bacteria; Biodegradability; Biodegradation; Biotechnology; Cellobiose; Chemical synthesis; Clonal deletion; Crop yield; Environmental protection; Flowers & plants; Fluorination; Gene deletion; Gene Expression Regulation, Bacterial; Herbicides - metabolism; Indoles - metabolism; Intermediates; Liquid chromatography; Mass spectrometry; Mass spectroscopy; Multigene Family; NMR; Nuclear magnetic resonance; Optimization; Organic chemistry; Phytotoxicity; Piperazines - metabolism; Seedlings; Streptomyces; Streptomyces - genetics; Streptomyces - metabolism; Synthetic Biology - methods; Toxins; Two dimensional analysis; Virulence; Virulence factors; Virulence Factors - metabolism; herbicide; heterologous production; unnatural analog; thaxtomins; Streptomyces albus
• ISSN: 0099-2240; 1098-5336
• DOI: 10.1128/AEM.00164-18

Thaxtomins are virulence factors of most plant-pathogenic strains. Due to their potent herbicidal activity, attractive environmental compatibility, and inherent biodegradability, thaxtomins are key active ingredients of bioherbicides approved by the U.S. Environmental Protection Agency. However, the low yield of thaxtomins in native producers limits their wide agricultural applications. Here, we describe the high-yield production of thaxtomins in a heterologous host. The thaxtomin gene cluster from 87.22 was cloned and expressed in J1074 after chromosomal integration. The production of thaxtomins and nitrotryptophan analogs was observed using liquid chromatography-mass spectrometry (LC-MS) analysis. When the engineered J1074 was cultured in the minimal medium Thx defined medium supplemented with 1% cellobiose (TDMc), the yield of the most abundant and herbicidal analog, thaxtomin A, was 10 times higher than that in 87.22, and optimization of the medium resulted in the highest yield of thaxtomin analogs at about 222 mg/liter. Further engineering of the thaxtomin biosynthetic gene cluster through gene deletion led to the production of multiple biosynthetic intermediates important to the chemical synthesis of new analogs. Additionally, the versatility of the thaxtomin biosynthetic system in J1074 was capitalized on to produce one unnatural fluorinated analog, 5-fluoro-thaxtomin A (5-F-thaxtomin A), whose structure was elucidated by a combination of MS and one-dimensional (1D) and 2D nuclear magnetic resonance (NMR) analyses. Natural and unnatural thaxtomins demonstrated potent herbicidal activity in radish seedling assays. These results indicated that J1074 has the potential to produce thaxtomins and analogs thereof with high yield, fostering their agricultural applications. Thaxtomins are agriculturally valuable herbicidal natural products, but the productivity of native producers is limiting. Heterologous expression of the thaxtomin gene cluster in J1074 resulted in the highest yield of thaxtomins ever reported, representing a significant leap forward in its wide agricultural use. Furthermore, current synthetic routes to thaxtomins and analogs are lengthy, and two thaxtomin biosynthetic intermediates produced at high yields in this work can provide precursors and building blocks to advanced synthetic routes. Importantly, the production of 5-F-thaxtomin A in engineered J1074 demonstrated a viable alternative to chemical methods in the synthesis of new thaxtomin analogs. Moreover, our work presents an attractive synthetic biology strategy to improve the supply of herbicidal thaxtomins, likely finding general applications in the discovery and production of many other bioactive natural products.