Single-cell RNA sequencing data locate ALDH1A2-mediated retinoic acid synthetic pathway to glomerular parietal epithelial cells

• Published in: Experimental biology and medicine (Maywood, N.J.) Vol. 249; p. 10167
• Main Authors: Liu, Wen-Bin, Fermin, Damian, Xu, An-Long, Kopp, Jeffrey B., Xu, Qihe
• Format: Journal Article
• Language: English
• Published: Switzerland Frontiers Media S.A 18.09.2024
• Subjects: acute kidney injury; Aldehyde Dehydrogenase 1 Family - genetics; Aldehyde Dehydrogenase 1 Family - metabolism; Aldh1a2; Animals; chronic kidney disease; Epithelial Cells - metabolism; Experimental Biology and Medicine; Humans; Kidney Glomerulus - metabolism; Kidney Glomerulus - pathology; Mice; Retinal Dehydrogenase - genetics; Retinal Dehydrogenase - metabolism; retinoic acid; scRNA-seq; Sequence Analysis, RNA; Single-Cell Analysis; snRNA-seq; Tretinoin - metabolism; Aldh1a2; chronic kidney disease; retinoic acid; scRNA-seq; rapidly progressive glomerulonephritis; parietal epithelial cells; acute kidney injury; snRNA-seq
• ISSN: 1535-3699; 1535-3702; 1535-3699
• DOI: 10.3389/ebm.2024.10167

Aldehyde dehydrogenase 1, family member A2, is a retinoic acid-synthesizing enzyme encoded by Aldh1a2 in mice and ALDH1A2 in humans. This enzyme is indispensable for kidney development, but its role in kidney physiology and pathophysiology remains to be fully defined. In this review, we mined single-cell and single-nucleus RNA sequencing databases of mouse and human kidneys and found that glomerular parietal epithelial cells (PECs) express a full set of genes encoding proteins needed for cellular vitamin A uptake, intracellular transport, and metabolism into retinoic acid. In particular, Aldh1a2/ALDH1A2 mRNAs are selectively enriched in mouse and human PECs. Aldh1a2 expression in PECs is greatly increased in a mouse model of anti-glomerular basement membrane glomerulonephritis and moderately induced in a mouse model of ischemia-reperfusion acute kidney injury. Aldh1a2 expression in PECs is substantially repressed in a chronic kidney disease mouse model combining diabetes, hypertension, and partial nephrectomy and is moderately repressed in mouse models of focal segmental glomerulosclerosis and diabetic nephropathy. Single-nucleus RNA sequencing data show that ALDH1A2 mRNA expression in PECs is diminished in patients with chronic kidney disease associated with diabetes, hypertension and polycystic kidney disease. In addition to data mining, we also performed Spearman’s rank correlation coefficient analyses and identified gene transcripts correlated with Aldh1a2/ALDH1A2 transcripts in mouse PECs and PEC subtypes, and in human PECs of healthy subjects and patients with AKI or CKD. Furthermore, we conducted Gene Ontology pathway analyses and identified the biological pathways enriched among these Aldh1a2/ALDH1A2 -correlated genes. Our data mining and analyses led us to hypothesize that ALDH1A2 - mediated retinoic acid synthesis in PECs plays a yet-undefined role in the kidney and that its dysregulation mediates injury. Conditional, PEC-selective Aldh1a2 knockout, RNA silencing and transgenic mouse models will be useful tools to test this hypothesis. Clinical studies on genetics, epigenetics, expression and functions of ALDH1A2 and other genes needed for retinoic acid biosynthesis and signaling are also warranted.