Detection of volatile organic compounds in headspace of Klebsiella pneumoniae and Klebsiella oxytoca colonies

• Published in: Frontiers in pediatrics Vol. 11; p. 1151000
• Main Authors: Bous, Michelle, Tielsch, Malte, Papan, Cihan, Kaiser, Elisabeth, Weber, Regine, Baumbach, Jörg Ingo, Becker, Sören L, Zemlin, Michael, Goedicke-Fritz, Sybelle
• Format: Journal Article
• Language: English
• Published: Switzerland Frontiers Media S.A 24.11.2023
• Subjects: biomarkers; detection; ion mobility spectrometry; klebsiella pneumoniae; premature infant; volatile organic compounds; detection; volatile organic compounds; biomarkers; pediatrics; ion mobility spectrometry; non-invasive diagnostics; klebsiella pneumoniae; premature infant
• ISSN: 2296-2360; 2296-2360
• DOI: 10.3389/fped.2023.1151000

Early diagnosis of infections and sepsis is essential as adequate therapy improves the outcome. Unfortunately, current diagnostics are invasive and time-consuming, making diagnosis difficult, especially in neonatology. Novel non-invasive analytical methods might be suitable to detect an infection at an early stage and might even allow identification of the pathogen. Our aim is to identify specific profiles of volatile organic compounds (VOCs) of bacterial species. Using multicapillary column-coupled ion mobility spectrometry (MCC/IMS), we performed headspace measurements of bacterial cultures from skin and anal swabs of premature infants obtained during weekly screening for bacterial colonization according to KRINKO. We analyzed 25 (KP) cultures on MacConkey (MC) agar plates, 25 (KO) cultures on MC agar and 25 bare MC agar plates as a control group. Using MCC/IMS, we identified a total of 159 VOC peaks. 85 peaks allowed discriminating KP and bare MC agar plates, and 51 peaks comparing KO and bare MC agar plates and 6 peaks between KP and KO significance level of  < 0.05 after , respectively. Peaks P51 ( ) and P158 (Phenylethyl Alcohol), showed the best sensitivity/specificity/ positive predictive value/negative predictive value of 99.9% each (  < 0.001) for KP. P158 showed the best sensitivity/specificity/positive predictive value/negative predictive value of 99.9% each (  < 0.001) for KO Comparing KP and KO, best differentiation was enabled using peaks P72, P97 and P16 with sensitivity/specificity/positive predictive value/negative predictive value of 76.0%, 84.0%, 82.6%, 77.8%, respectively (  < 0.05). We developed a method for the analysis of VOC profiles of bacteria. Using MCC/IMS, we demonstrated that VOCs derived from bacteria are clearly distinguishable from a bare agar plate. Characteristic peaks obtained by MCC/IMS are particularly suitable for the species-specific identification and differentiation of KP and KO. Thus, MCC/IMS might be a useful tool for diagnostics. Future studies must clarify whether similar patterns of VOCs can be detected in patients that are colonized or infected with KP or KO to enable rapid and accurate diagnosis of bacterial colonization.