Genomic resources for the brown planthopper, Nilaparvata lugens： Transcriptome pyrosequencing and microarray design

• Published in: Insect science Vol. 19; no. 1; pp. 1 - 12
• Main Authors: Bass, Chris, Hebsgaard, Martin Bay, Hughes, Joseph
• Format: Journal Article
• Language: English
• Published: Melbourne, Australia Blackwell Publishing Asia 01.02.2012
• Subjects: Adaptations; Biotypes; brown planthopper; Cholinesterase; Crops; Cytochrome P450; Detoxification; detoxification enzymes; DNA microarrays; Enzymes; expressed sequence tags; Gene expression; genomics; Glutathione transferase; insecticide resistance; Insecticides; Molecular modelling; Nilaparvata lugens; Oryza sativa; Pesticides; Pests; Plant communities; Secondary metabolites; transcriptome sequencing; Xenobiotics; 基因组; 基因资源; 抗性水稻品种; 焦磷酸测序; 细胞色素P450; 芯片设计; 褐飞虱; 转录
• ISSN: 1672-9609; 1744-7917
• DOI: 10.1111/j.1744-7917.2011.01440.x

The brown planthopper, Nilaparvata lugens is a pest of cultivated rice through- out Asia and is controlled using insecticides and/or resistant rice varieties. This species has developed resistance to many classes of insecticide and biotypes have developed that are vir- ulent against formerly resistant rice cultivars. Insects use a suite of detoxification enzymes, including cytochrome P450s, glutathione S-transferases and carboxyl/cholinesterases to defend themselves against plant secondary metabolites and pesticides. Pyrosequencing on the Roche 454-FLX platform was used to produce a substantial expressed sequence tag （EST） dataset to complement the existing Sanger sequenced ESTs in GenBank. A total of 78 959 reads were combined with the 37 392 publically available Sanger ESTs; these assembled into 8 911 contigs and 10 620 singletons. Analysis of the distribution of tenta- tive unique genes （TUGs） with the gene ontology for biological processes and molecular functions suggests that the 454 and Sanger EST assembly is broadly representative of the N. lugens transcriptome. The brown planthopper transcriptome was found to contain 31 TUGs encoding P450s, nine encoding glutathione S-transferases and 26 encoding car- boxyl/cholinesterases and many of these are putatively involved in the detoxification of xenobiotics. The Agilent eArray platform was used to construct an oligonucleotide mi- croarray populated with probes for ~ 19 000 unigene sequences, including all those known to encode detoxification enzymes. The genomic resources developed in this study will be useful to the community studying this crop pest and will help elucidate the molecular mechanism underlying insecticide resistance and planthopper adaptation to resistant rice cultivars.