Twenty-five years of Genomes OnLine Database (GOLD): data updates and new features in v.9

The Genomes OnLine Database (GOLD) (https://gold.jgi.doe.gov/) at the Department of Energy Joint Genome Institute (DOE-JGI) continues to maintain its role as one of the flagship genomic metadata repositories of the world. The ever-increasing number of projects and metadata are freely available to th...

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Published inNucleic acids research Vol. 51; no. D1; pp. D957 - D963
Main Authors Mukherjee, Supratim, Stamatis, Dimitri, Li, Cindy Tianqing, Ovchinnikova, Galina, Bertsch, Jon, Sundaramurthi, Jagadish Chandrabose, Kandimalla, Mahathi, Nicolopoulos, Paul A, Favognano, Alessandro, Chen, I-Min A, Kyrpides, Nikos C, Reddy, T B K
Format Journal Article
LanguageEnglish
Published England Oxford University Press 06.01.2023
Subjects
BASIC BIOLOGICAL SCIENCES
Database Issue
Databases, Genetic
Genome
Genomics
Software
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Summary:The Genomes OnLine Database (GOLD) (https://gold.jgi.doe.gov/) at the Department of Energy Joint Genome Institute (DOE-JGI) continues to maintain its role as one of the flagship genomic metadata repositories of the world. The ever-increasing number of projects and metadata are freely available to the user community world-wide. GOLD's metadata is consumed by scientists and remains an important source for large-scale comparative genomics analysis initiatives. Encouraged by this active user engagement and growth, GOLD has continued to add new components and capabilities. The new features such as a public Application Programming Interface (API) and Ecosystem landing page as well as the growth of different entities in this current GOLD v.9 edition are described in detail in this manuscript.
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AC02-05CH11231; 89233218CNA000001; AC05-00OR22725; AC05-76RL01830
National Microbiome Data Collaborative (NMDC)
USDOE Office of Science (SC), Biological and Environmental Research (BER)
ISSN:0305-1048
1362-4962
DOI:10.1093/nar/gkac974