Molecular Diagnostic and Prognostic Subtyping of Gliomas in Tunisian Population

• Published in: Molecular neurobiology Vol. 54; no. 4; pp. 2381 - 2394
• Main Authors: Trabelsi, Saoussen, Chabchoub, Imen, Ksira, Iadh, Karmeni, Nadhir, Mama, Nadia, Kanoun, Samia, Burford, Anna, Jury, Alexa, Mackay, Alan, Popov, Sergey, Bouaouina, Noureddine, Ben Ahmed, Slim, Mokni, Moncef, Tlili, Kalthoum, Krifa, Hedi, Yacoubi, Mohamed Tahar, Jones, Chris, Saad, Ali, H’mida Ben Brahim, Dorra
• Format: Journal Article
• Language: English
• Published: New York Springer US 01.05.2017; Springer Nature B.V
• Subjects: Adolescent; Adult; Aged; Biomarkers, Tumor - metabolism; Biomedical and Life Sciences; Biomedicine; Brain cancer; Brain Neoplasms - classification; Brain Neoplasms - diagnosis; Brain Neoplasms - genetics; Brain Neoplasms - therapy; Cell Biology; Child; Child, Preschool; Cluster Analysis; Cohort Studies; DNA Methylation - genetics; Epigenesis, Genetic; Female; Glioma - classification; Glioma - diagnosis; Glioma - genetics; Glioma - therapy; Histopathology; Humans; Immunohistochemistry; Infant; Kaplan-Meier Estimate; Male; Medical prognosis; Middle Aged; Mutation; Neurobiology; Neurology; Neurosciences; Neurosurgery; Pathology; Pathology, Molecular; Prognosis; Survival Analysis; Tissue Array Analysis; Tumors; Tunisia; Young Adult; Tunisia; Subtypes; Glioma; (Epi)genetic; Molecular; Tunisia
• ISSN: 0893-7648; 1559-1182
• DOI: 10.1007/s12035-016-9805-6

It has become increasingly evident that morphologically similar gliomas may have distinct clinical phenotypes arising from diverse genetic signatures. To date, glial tumours from the Tunisian population have not been investigated. To address this, we correlated the clinico-pathology with molecular data of 110 gliomas by a combination of HM450K array, MLPA and TMA-IHC. PTEN loss and EGFR amplification were distributed in different glioma histological groups. However, 1p19q co-deletion and KIAA1549:BRAF fusion were, respectively, restricted to Oligodendroglioma and Pilocytic Astrocytoma. CDKN2A loss and EGFR overexpression were more common within high-grade gliomas. Furthermore, survival statistical correlations led us to identify Glioblastoma (GB) prognosis subtypes. In fact, significant lower overall survival (OS) was detected within GB that overexpressed EGFR and Cox2. In addition, IDH1R132H mutation seemed to provide a markedly survival advantage. Interestingly, the association of IDHR132H mutation and EGFR normal status, as well as the association of differentiation markers, defined GB subtypes with good prognosis. By contrast, poor survival GB subtypes were defined by the combination of PTEN loss with PDGFRa expression and/or EGFR amplification. Additionally, GB presenting p53-negative staining associated with CDKN2A loss or p21 positivity represented a subtype with short survival. Thus, distinct molecular subtypes with individualised prognosis were identified. Interestingly, we found a unique histone mutation in a poor survival young adult GB case. This tumour exceptionally associated the H3F3A G34R mutation and MYCN amplification as well as 1p36 loss and 10q loss. Furthermore, by exhibiting a remarkable methylation profile, it emphasised the oncogenic power of G34R mutation connecting gliomagenesis and chromatin regulation.