Origin and diversification of ECERIFERUM1 (CER1) and ECERIFERUM3 (CER3) genes in land plants and phylogenetic evidence that the ancestral CER1/3 gene resulted from the fusion of pre-existing domains

• Published in: Molecular phylogenetics and evolution Vol. 159; p. 107101
• Main Authors: Chaudhary, Komal, Geeta, R., Panjabi, Priya
• Format: Journal Article
• Language: English
• Published: United States Elsevier Inc 01.06.2021
• Subjects: Alkanes; CER1/CER3 gene; Cuticular waxes; Evolution; Gene fusion; WAX2 domain; Alkanes; Evolution; WAX2 domain; Cuticular waxes; CER1/CER3 gene; Gene fusion
• ISSN: 1055-7903; 1095-9513
• DOI: 10.1016/j.ympev.2021.107101

[Display omitted] •The CER1/3 gene most probably originated in the common ancestor of green plants.•CER1 and CER3 genes originated via duplication of CER1/3 in the ancestral land plants.•Diversification of the paralogs involved differential divergence of ERG3/FAH and WAX2 domains.•The closest relatives of CER1/3 gene were sequences from cryptophyte and diatoms.•CER1/3 gene may have originated via fusion of pre-existing domains. ECERIFERUM1 (CER1) and ECERIFERUM3 (CER3) are key genes in synthesis of alkanes, a major component of cuticular waxes in land plants. The genes share extensive similarity, including the N-terminal (ERG3/FAH) and C-terminal (WAX2) domains. This study, traces the origin, evolutionary history, phylogenetic relationships and variation in copy number of the two genes within and beyond the Viridiplantae (green plants). Protein homologs of both CER1 and CER3 were identified across most Embryophyta (land plants), a single homolog (CER1/3) in charophytes and prasinophytes, and none in the other green, red or brown algae. Ancestral state reconstructions in 100 sequenced Archaeplastida using presence/absence of CER1/3 family genes revealed that the CER1/3 gene probably originated in the common ancestor of Viridiplantae. Phylogenetic analysis of CER1 and CER3 protein sequences from 146 plant species strongly suggests that the two genes originated by duplication of CER1/3 in the ancestral embryophyte. The evolution of CER1 and CER3 genes involved differential divergence of the two domains. Outside Embryophyta, CER1/3 similar sequences identified in diatoms and a cryptophyte, were the closest relatives of the CER1/3 family proteins. Proteins harbouring WAX2-wxAR (WAX2 associated region) similar regions were identified in proteins of bacteria, Archaea, cryptophytes, dinoflagellates and Stramenopiles. The independent existence of both ERG3/FAH and WAX2-wxAR domains in diverse lineages strongly points to the origin of CER1/3 gene in green plants by the fusion of pre-existing domains.