QTL Mapping for Hull Thickness and Related Traits in Hybrid Rice Xieyou 9308

We conducted a quantitative trait locus （QTL） analysis of 165 rice recombinant inbred lines derived from a cross between Zhonghui 9308 （Z9308） and Xieqingzao B （XB） in Hainan and Hangzhou, China. Grain thickness （GT）, brown rice thickness （BRT）, hull thickness （HT） and milling quality were used for...

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Bibliographic Details
Published inRice science Vol. 21; no. 1; pp. 29 - 38
Main Authors LUO, Li-li, ZHANG, Ying-xin, CHEN, Dai-bo, ZHAN, Xiao-deng, SHEN, Xi-hong, CHENG, Shi-hua, CAO, Li-yong
Format Journal Article
LanguageEnglish
Published Elsevier B.V 2014
National Center for Rice Improvement, China National Rice Research Institute, Hangzhou 310036, China
Subjects
brown rice
China
chromosomes
correlation
filling period
homozygosity
hull thickness
hybrids
inbred lines
isogenic lines
milling quality
phenotype
QTL mapping
QTL定位
quantitative trait loci
rice
协优9308
数量性状基因座
杂交稻
相关性状
船体厚度
近等基因系
重组自交系
China
hull thickness
milling quality
rice
QTL mapping
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Summary:We conducted a quantitative trait locus （QTL） analysis of 165 rice recombinant inbred lines derived from a cross between Zhonghui 9308 （Z9308） and Xieqingzao B （XB） in Hainan and Hangzhou, China. Grain thickness （GT）, brown rice thickness （BRT）, hull thickness （HT） and milling quality were used for QTL mapping. HT was significantly and positively correlated with GT and BRT. Twenty-nine QTLs were detected with phenotypic effects ranging from 2.80% to 21.27%. Six QTLs, qGT3, qBRT3, qBRT4, qHT6.1, qHT8 and qHT11, were detected repeatedly across two environments. Inherited from XB qHT6.1, qHT8 and qHT11 showed stable expression, explaining 9.92%, 21.27% and 10.83% of the phenotypic variances in Hainan and 9.61%, 6.40% and 6.71% in Hangzhou, respectively. Additionally, the QTL cluster between RM5944 and RM5626 on chromosome 3 was probably responsible for GT and milling quality. The cluster between RM6992 and RM6473 on chromosome 4 played an important role in grain filling. Three near isogenic lines （NILs）, X345, X338 and X389, were selected because they contained homozygous fragments from Zhonghui 9308, corresponding to qHT6.1, qHT8 and qHT11, respectively. The hull of XB was thicker than those of X345, X338 and X389. In all the lines, qHT6.1, qHT8 and qHT11 that regulated rice HT were stably inherited with obvious genetic effects.
Bibliography:33-1317/S
We conducted a quantitative trait locus （QTL） analysis of 165 rice recombinant inbred lines derived from a cross between Zhonghui 9308 （Z9308） and Xieqingzao B （XB） in Hainan and Hangzhou, China. Grain thickness （GT）, brown rice thickness （BRT）, hull thickness （HT） and milling quality were used for QTL mapping. HT was significantly and positively correlated with GT and BRT. Twenty-nine QTLs were detected with phenotypic effects ranging from 2.80% to 21.27%. Six QTLs, qGT3, qBRT3, qBRT4, qHT6.1, qHT8 and qHT11, were detected repeatedly across two environments. Inherited from XB qHT6.1, qHT8 and qHT11 showed stable expression, explaining 9.92%, 21.27% and 10.83% of the phenotypic variances in Hainan and 9.61%, 6.40% and 6.71% in Hangzhou, respectively. Additionally, the QTL cluster between RM5944 and RM5626 on chromosome 3 was probably responsible for GT and milling quality. The cluster between RM6992 and RM6473 on chromosome 4 played an important role in grain filling. Three near isogenic lines （NILs）, X345, X338 and X389, were selected because they contained homozygous fragments from Zhonghui 9308, corresponding to qHT6.1, qHT8 and qHT11, respectively. The hull of XB was thicker than those of X345, X338 and X389. In all the lines, qHT6.1, qHT8 and qHT11 that regulated rice HT were stably inherited with obvious genetic effects.
rice; hull thickness; milling quality; QTI_ mapping
ObjectType-Article-1
SourceType-Scholarly Journals-1
ObjectType-Feature-2
content type line 23
ISSN:1672-6308
1876-4762
DOI:10.1016/S1672-6308(13)60156-0