Assembly and comparative analysis of the complete mitochondrial genome of Bupleurum chinense DC

• Published in: BMC genomics Vol. 23; no. 1; pp. 1 - 664
• Main Authors: Qiao, Yonggang, Zhang, Xinrui, Li, Zheng, Song, Yun, Sun, Zhe
• Format: Journal Article
• Language: English
• Published: London BioMed Central 21.09.2022; BMC
• Subjects: Amino acids; Annotations; Bupleurum; Bupleurum chinense; Chloroplasts; Comparative analysis; Conversion; Cytochrome; Editing; Evolution; Evolutionary genetics; Genes; Genetic diversity; Genetic engineering; Genomes; Genomics; Herbal medicine; Medicinal plants; Mitochondria; Mitochondrial genome; Phylogenetic analysis; Phylogeny; Proteins; Repeat sequence; Respiration; RNA editing; rRNA; Transfer RNA; tRNA; China
• ISSN: 1471-2164; 1471-2164
• DOI: 10.1186/s12864-022-08892-z

Abstract Background Bupleurum chinense ( B. chinense) is a plant that is widely distributed globally and has strong pharmacological effects. Though the chloroplast(cp) genome of B. chinense has been studied, no reports regarding the mitochondrial(mt) genome of B. chinense have been published yet. Results The mt genome of B.chinense was assembled and functionally annotated. The circular mt genome of B. chinense was 435,023 bp in length, and 78 genes, including 39 protein-coding genes, 35 tRNA genes, and 4 rRNA genes, were annotated. Repeat sequences were analyzed and sites at which RNA editing would occur were predicted. Gene migration was observed to occur between the mt and cp genomes of B. chinense via the detection of homologous gene fragments. In addition, the sizes of plant mt genomes and their GC content were analyzed and compared. The sizes of mt genomes of plants varied greatly, but their GC content was conserved to a greater extent during evolution. Ka/Ks analysis was based on code substitutions, and the results showed that most of the coding genes were negatively selected. This indicates that mt genes were conserved during evolution. Conclusion In this study, we assembled and annotated the mt genome of the medicinal plant B. chinense . Our findings provide extensive information regarding the mt genome of B. chinense , and help lay the foundation for future studies on the genetic variations, phylogeny, and breeding of B. chinense via an analysis of the mt genome.