Conformational properties of hybrid peptides containing α- and ω-amino acids

• Published in: The journal of peptide research Vol. 63; no. 3; pp. 279 - 289
• Main Authors: Roy, R.S., Balaram, P.
• Format: Journal Article
• Language: English
• Published: Oxford, UK Blackwell Publishing Ltd 01.03.2004
• Subjects: Amino Acids - chemistry; hybrid peptides; Molecular Structure; peptide conformations; Peptides - chemistry; Protein Conformation; αω sequences; β-peptides; γ-peptides
• ISSN: 1397-002X; 1399-3011
• DOI: 10.1111/j.1399-3011.2004.00143.x

:  This review briefly surveys the conformational properties of guest ω‐amino acid residues when incorporated into host α‐peptide sequences. The results presented focus primarily on the use of β‐ and γ‐residues in αω sequences. The insertion of additional methylene groups into peptide backbones enhances the range of accessible conformations, introducing additional torsional variables. A nomenclature system, which permits ready comparisons between α‐peptides and hybrid sequences, is defined. Crystal structure determination of hybrid peptides, which adopt helical and β‐hairpin conformations permits the characterization of backbone conformational parameters for β‐ and γ‐residues inserted into regular α‐polypeptide structures. Substituted β‐ and γ‐residues are more limited in the range of accessible conformation than their unsubstituted counterparts. The achiral β,β‐disubstituted γ‐amino acid, gabapentin, is an example of a stereochemically constrained residue in which the torsion angles about the Cβ–Cγ (θ1) and Cα–Cβ (θ2) bonds are restricted to the gauche conformation. Hybrid sequences permit the design of novel hydrogen bonded rings in peptide structures.