Uncovering multi-site identifiability based on resting-state functional connectomes

• Published in: NeuroImage (Orlando, Fla.) Vol. 202; p. 115967
• Main Authors: Bari, Sumra, Amico, Enrico, Vike, Nicole, Talavage, Thomas M., Goñi, Joaquín
• Format: Journal Article
• Language: English
• Published: United States Elsevier Inc 15.11.2019; Elsevier Limited
• Subjects: Brain fingerprinting; Brain research; Datasets; Fingerprinting; Functional connectomes; Functional magnetic resonance imaging; Identifiability; Medical imaging; Multi-site; Multimedia; Neural networks; Neuroimaging; Resting-state fMRI; Scanners; Science; Studies; Systems stability; Indiana; United States > US; Resting-state fMRI; Brain fingerprinting; Identifiability; Functional connectomes; Multi-site
• ISSN: 1053-8119; 1095-9572
• DOI: 10.1016/j.neuroimage.2019.06.045

Multi-site studies are becoming important to increase statistical power, enhance generalizability, and to improve the likelihood of pooling relevant subgroups together—activities which are otherwise limited by the availability of subjects or funds at a single site. Even with harmonized imaging sequences, site-dependent variability can mask the advantages of these multi-site studies. The aim of this study was to assess multi-site reproducibility in resting-state functional connectivity “fingerprints”, and to improve identifiability of functional connectomes. The individual fingerprinting of functional connectivity profiles is promising due to its potential as a robust neuroimaging biomarker with which to draw single-subject inferences. We evaluated, on two independent multi-site datasets, individual fingerprints in test-retest visit pairs within and across two sites and present a generalized framework based on principal component analysis to improve identifiability. Those principal components that maximized differential identifiability of a training dataset were used as an orthogonal connectivity basis to reconstruct the individual functional connectomes of training and validation sets. The optimally reconstructed functional connectomes showed a substantial improvement in individual fingerprinting of the subjects within and across the two sites and test-retest visit pairs relative to the original data. A notable increase in ICC values for functional edges and resting-state networks were also observed for reconstructed functional connectomes. Improvements in identifiability were not found to be affected by global signal regression. Post-hoc analyses assessed the effect of the number of fMRI volumes on identifiability and showed that multi-site differential identifiability was for all cases maximized after optimal reconstruction. Finally, the generalizability of the optimal set of orthogonal basis of each dataset was evaluated through a leave-one-out procedure. Overall, results demonstrate that the data-driven framework presented in this study systematically improves identifiability in resting-state functional connectomes in multi-site studies.