Molecular insights into degron recognition by CRL5ASB7 ubiquitin ligase

• Published in: Nature communications Vol. 15; no. 1; pp. 6177 - 10
• Main Authors: Zhou, Mengyu, Wang, Xiaolu, Li, Jiangtao, Ma, Jinfeng, Bao, Ziyu, Yan, Xiaojie, Zhang, Bing, Liu, Tong, Yu, Ying, Mi, Wenyi, Dong, Cheng
• Format: Journal Article
• Language: English
• Published: London Nature Publishing Group UK 22.07.2024; Nature Publishing Group; Nature Portfolio
• Subjects: 13/31; 631/45/474/2073; 631/45/535/1266; 82/16; 82/29; 82/80; 82/83; Ankyrins; Cardiology; Cellular structure; Crystal structure; Cullin; Electrostatic properties; Enzymes; Grooves; Humanities and Social Sciences; Hydrophobicity; Immunology; Molecular modelling; multidisciplinary; Physiology; Proteins; Receptors; Recognition; Science; Science (multidisciplinary); Substrates; Ubiquitin-protein ligase
• ISSN: 2041-1723; 2041-1723
• DOI: 10.1038/s41467-024-50556-x

The ankyrin (ANK) SOCS box (ASB) family, encompassing ASB1–18, is the largest group of substrate receptors of cullin 5 Ring E3 ubiquitin ligase. Nonetheless, the mechanism of substrate recognition by ASB family proteins has remained largely elusive. Here we present the crystal structure of ASB7-Elongin B-Elongin C ternary complex bound to a conserved helical degron. ASB7 employs its ANK3-6 to form an extended groove, effectively interacting with the internal α-helix-degron through a network of side-chain-mediated electrostatic and hydrophobic interactions. Our structural findings, combined with biochemical and cellular analyses, identify the key residues of the degron motif and ASB7 required for their recognition. This will facilitate the identification of additional physiological substrates of ASB7 by providing a defined degron motif for screening. Furthermore, the structural insights provide a basis for the rational design of compounds that can specifically target ASB7 by disrupting its interaction with its cognate degron. ASB7 acts as the substrate receptor for cullin 5 RING E3 ubiquitin ligase (CRL5), targeting the internal α-helix degron for degradation. Here, the authors elucidate the molecular mechanism of substrate recognition by ASB7 using structural, biochemical and cellular analyses.