Phylogenetic Affiliations of Mesopelagic Acantharia and Acantharian-like Environmental 18S rRNA Genes off the Southern California Coast

• Published in: Protist Vol. 161; no. 2; pp. 197 - 211
• Main Authors: Gilg, Ilana C., Amaral-Zettler, Linda A., Countway, Peter D., Moorthi, Stefanie, Schnetzer, Astrid, Caron, David A.
• Format: Journal Article
• Language: English
• Published: Germany Elsevier GmbH 01.04.2010
• Subjects: 18S rRNA phylogeny; Acantharea; California; CARD-FISH; Cluster Analysis; deep-sea protist; DNA, Protozoan - chemistry; DNA, Protozoan - genetics; DNA, Ribosomal - chemistry; DNA, Ribosomal - genetics; Genes, rRNA; In Situ Hybridization, Fluorescence; Molecular Sequence Data; novel protistan lineage; Phylogeny; Rhizaria - genetics; Rhizaria - isolation & purification; RNA, Protozoan - genetics; RNA, Ribosomal, 18S - genetics; sarcodine; Seawater; Sequence Analysis, DNA; California; 18S rRNA phylogeny; novel protistan lineage; CARD-FISH; Acantharea; sarcodine; deep-sea protist
• ISSN: 1434-4610; 1618-0941
• DOI: 10.1016/j.protis.2009.09.002

Incomplete knowledge of acantharian life cycles has hampered their study and limited our understanding of their role in the vertical flux of carbon and strontium. Molecular tools can help identify enigmatic life stages and offer insights into aspects of acantharian biology and evolution. We inferred the phylogenetic position of acantharian sequences from shallow water, as well as acantharian-like clone sequences from 500 and 880 m in the San Pedro Channel, California. The analyses included validated acantharian and polycystine sequences from public databases with environmental clone sequences related to acantharia and used Bayesian inference methods. Our analysis demonstrated strong support for two branches of unidentified organisms that are closely related to, but possibly distinct from the Acantharea. We also found evidence of acantharian sequences from mesopelagic environments branching within the chaunacanthid clade, although the morphology of these organisms is presently unknown. HRP-conjugated probes were developed to target Acantharea and phylotypes from Unidentified Clade 1 using Catalyzed Reporter Deposition Fluorescence In Situ Hybridization (CARD-FISH) on samples collected at 500 m. Our CARD-FISH experiments targeting phylotypes from an unidentified clade offer preliminary glimpses into the morphology of these protists, while a morphology for the aphotic acantharian lineages remains unknown at this time.