Cationic polymer coatings for design of electroosmotic flow and control of DNA adsorption

• Published in: Analytica chimica acta Vol. 507; no. 1; pp. 55 - 62
• Main Authors: Liu, Xuezhu, Erickson, David, Li, Dongqing, Krull, Ulrich J
• Format: Journal Article
• Language: English
• Published: Elsevier B.V 01.04.2004
• Subjects: DNA microarray; Electroosmotic flow; Hybridization; Microfluidics; DNA microarray; Electroosmotic flow; Hybridization; Microfluidics
• ISSN: 0003-2670; 1873-4324
• DOI: 10.1016/j.aca.2003.10.075

A difficulty with the design and operation of an electrokinetically operated DNA hybridization microfluidic chip is the opposite direction of the electroosmotic flow and electrophoretic mobility of the oligonucleotides. This makes it difficult to simultaneously deliver targets and an appropriate hybridization buffer simultaneously to the probe sites. In this work we investigate the possibility of coating the inner walls of the microfluidic system with hexadimentrine bromide (polybrene, PB) and other cationic polymers in order to reverse the direction of electroosmotic flow so that it acts in the same direction as the electrophoretic transport of the oligonucleotides. The results indicated that the electroosmotic flow (EOF) in channels that were coated with the polymer could be reversed in 1× TBE buffer or 1× SSC buffer. Under these conditions, the DNA and EOF move in the same direction, and the flow can be used to deliver DNA to an area for selective hybridization within the channel. The effects of coating the surface of a nucleic acid microarray with polybrene were also studied to assess non-selective adsorption and stability. The polybrene coating significantly reduced the extent of non-selective adsorption of oligonucleotides in comparison to adsorption onto a glass surface, and the coating did not alter the extent of hybridization. The results suggest that use of the coating makes it possible to achieve semi-quantitative manipulation of nucleic acid oligomers for delivery to an integrated microarray or biosensor.