Conservation of the positions of metazoan introns from sponges to humans

• Published in: Gene Vol. 295; no. 2; pp. 299 - 309
• Main Authors: Müller, Werner E.G, Böhm, Markus, Grebenjuk, Vladislav A, Skorokhod, Alexander, Müller, Isabel M, Gamulin, Vera
• Format: Journal Article
• Language: English
• Published: Netherlands Elsevier B.V 07.08.2002
• Subjects: Amino Acid Sequence; Animals; Base Sequence; Calcium-Binding Proteins - genetics; Conserved Sequence - genetics; DNA - chemistry; DNA - genetics; DNA-Binding Proteins; Humans; Intron/exon borders; Introns - genetics; JNK; JNK Mitogen-Activated Protein Kinases; Mitogen-Activated Protein Kinases - genetics; Molecular Sequence Data; p38; p38 Mitogen-Activated Protein Kinases; Phylogeny; Porifera; Porifera - genetics; Sequence Alignment; Sequence Analysis, DNA; Sequence Homology, Amino Acid; Sponges; Stress activated protein kinase; RTKs, receptor tyrosine kinases; p38; Porifera; Stress activated protein kinase; JNK; AIF, allograft inflammatory factor; Intron/exon borders; PCR, polymerase chain reaction; Sponges; MAPKs, mitogen-activated protein kinases; SAPK, stress activated protein kinase
• ISSN: 0378-1119; 1879-0038
• DOI: 10.1016/S0378-1119(02)00690-X

Sponges (phylum Porifera) are the phylogenetic oldest Metazoa still extant. They can be considered as reference animals (Urmetazoa) for the understanding of the evolutionary processes resulting in the creation of Metazoa in general and also for the metazoan gene organization in particular. In the marine sponge Suberites domuncula, genes encoding p38 and JNK kinases contain nine and twelve introns, respectively. Eight introns in both genes share the same positions and the identical phases. One p38 intron slipped for six bases and the JNK gene has three more introns. However, the sequences of the introns are not conserved and the introns in JNK gene are generally much longer. Introns interrupt most of the conserved kinase subdomains I–XI and are found in all three phases (0, 1 and 2). We analyzed in details p38 and JNK genes from human, Caenorhabditis elegans and Drosophila melanogaster and found in most genes introns at the positions identical to those in sponge genes. The exceptions are two p38 genes from D. melanogaster that have lost all introns in the coding sequence. The positions of 11 introns in each of four human p38 genes are fully conserved and ten introns occupy identical positions as the introns in sponge p38 or JNK genes. The same is true for nine, out of ten introns in the human JNK-1 gene. The introns in human p38 and JNK genes are on average more than ten times longer than corresponding introns in sponges. It was proposed that yeast HOG1-like kinases (from i.e. Saccharomyces cerevisiae and Emericella nidulans) and metazoan p38 and JNK kinases are orthologues. p38 and JNK genes were created after the split from fungi by the duplication and diversification of the HOG1-like progenitor gene. Our results further support the common origin of p38 and JNK genes and speak in favor of a very early time of duplication. The ancestral gene contained at least ten introns, which are still present at the very conserved positions in p38 and JNK genes of extant animals. Four of these introns are present at the same positions in the HOG-like gene in the fungus E. nidulans. The others probably entered the ancestral gene after the split of fungi, but before the duplication of the gene and before the creation of the common, urmetazoan progenitor of all multicellular animals. A second gene coding for an immune molecule is described, the allograft inflammatory factor, which likewise showed a highly conserved exon/intron structure in S. domuncula and in human. These data show that the intron/exon borders are highly conserved in genes from sponges to human.