The Plant Organelles Database 3 (PODB3) update 2014: integrating electron micrographs and new options for plant organelle research

• Published in: Plant and cell physiology Vol. 55; no. 1; p. e1
• Main Authors: Mano, Shoji, Nakamura, Takanori, Kondo, Maki, Miwa, Tomoki, Nishikawa, Shuh-ichi, Mimura, Tetsuro, Nagatani, Akira, Nishimura, Mikio
• Format: Journal Article
• Language: English
• Published: Japan 01.01.2014
• Subjects: Databases as Topic; Organelles - ultrastructure; Plant Cells - ultrastructure; User-Computer Interface; Database; PODB; Perception; Electron micrograph; Organelle dynamics
• ISSN: 0032-0781; 1471-9053
• DOI: 10.1093/pcp/pct140

The Plant Organelles Database 2 (PODB2), which was first launched in 2006 as PODB, provides static image and movie data of plant organelles, protocols for plant organelle research and external links to relevant websites. PODB2 has facilitated plant organellar research and the understanding of plant organelle dynamics. To provide comprehensive information on plant organelles in more detail, PODB2 was updated to PODB3 (http://podb.nibb.ac.jp/Organellome/). PODB3 contains two additional components: the electron micrograph database and the perceptive organelles database. Through the electron micrograph database, users can examine the subcellular and/or suborganellar structures in various organs of wild-type and mutant plants. The perceptive organelles database provides information on organelle dynamics in response to external stimuli. In addition to the extra components, the user interface for access has been enhanced in PODB3. The data in PODB3 are directly submitted by plant researchers and can be freely downloaded for use in further analysis. PODB3 contains all the information included in PODB2, and the volume of data and protocols deposited in PODB3 continue to grow steadily. We welcome contributions of data from all plant researchers to enhance the utility and comprehensiveness of PODB3.