Effects of different preservation methods on inter simple sequence repeat (ISSR) and random amplified polymorphic DNA (RAPD) molecular markers in botanic samples

• Published in: Comptes rendus. Biologies Vol. 340; no. 4; pp. 204 - 213
• Main Authors: Wang, Xiaolong, Li, Lin, Zhao, Jiaxin, Li, Fangliang, Guo, Wei, Chen, Xia
• Format: Journal Article
• Language: English
• Published: France Elsevier Masson SAS 01.04.2017
• Subjects: Botanic samples; chest; cluster analysis; DNA; genetic markers; ice; ISSR; Microsatellite Repeats; nitrogen; Plants - chemistry; Plants - genetics; Preservation methods; Preservation, Biological - methods; random amplified polymorphic DNA technique; Random Amplified Polymorphic DNA Technique - methods; RAPD; silica gel; Preservation methods; ISSR; Botanic samples; RAPD
• ISSN: 1631-0691; 1768-3238; 1768-3238
• DOI: 10.1016/j.crvi.2017.03.002

To evaluate the effects of different preservation methods (stored in a −20°C ice chest, preserved in liquid nitrogen and dried in silica gel) on inter simple sequence repeat (ISSR) or random amplified polymorphic DNA (RAPD) analyses in various botanical specimens (including broad-leaved plants, needle-leaved plants and succulent plants) for different times (three weeks and three years), we used a statistical analysis based on the number of bands, genetic index and cluster analysis. The results demonstrate that methods used to preserve samples can provide sufficient amounts of genomic DNA for ISSR and RAPD analyses; however, the effect of different preservation methods on these analyses vary significantly, and the preservation time has little effect on these analyses. Our results provide a reference for researchers to select the most suitable preservation method depending on their study subject for the analysis of molecular markers based on genomic DNA.