The impact of prehistoric human dispersals on the presence of tobacco-related oral cancer in Northeast India

• Published in: Gene Vol. 813; p. 146098
• Main Authors: Kundu, Sharbadeb, Dhar, Bishal, Das, Raima, Laskar, Shaheen, Singh, Seram Anil, Kapfo, Wetetsho, Paul, Rajesh, Ramshankar, Vijayalakshmi, Choudhury, Yashmin, Ghosh, Sankar Kumar
• Format: Journal Article
• Language: English
• Published: Netherlands Elsevier B.V 01.03.2022
• Subjects: Adult; alleles; AMOVA; Anatomically modern human dispersal; Ancestry-specific allele frequency; Asians - genetics; Case-Control Studies; China; descriptive statistics; Disease-associated admixture component; DNA, Mitochondrial - genetics; Ethnicity - genetics; Female; Gene Frequency; Genetic Predisposition to Disease; Genetic Variation; Genetics, Population - methods; genotyping; Global admixture analysis; Haplotypes; Human Migration; Humans; India; India - epidemiology; lifestyle; Male; Middle Aged; Migration analysis; mitochondria; Mitochondrial macro-haplogroup diversity; mouth neoplasms; Mouth Neoplasms - blood; Mouth Neoplasms - epidemiology; Mouth Neoplasms - etiology; Mouth Neoplasms - genetics; mtDNA-based marker; Multidimensional scaling; Northeast India; Oral cancer susceptibility autosomal loci; phenotype; Phylogeny; Prehistoric migration route; Prolonged tobacco-chewers; risk; South East Asia; Tobacco Smoking; Tobacco Use - blood; Tobacco Use - epidemiology; Tobacco Use - genetics; Tobacco-related oral cancer; Young Adult; India; South East Asia; China; MPD; Prehistoric migration route; MCMC; D-Loop; Multidimensional scaling; Anatomically modern human dispersal; CHS; Global admixture analysis; Mitochondrial macro-haplogroup diversity; HSD; KHV; NCBI; SNPs; AMH; MDS; BSP; ML; AA; Northeast India; HKY+G; mHG; kya; CVE; LGM; AMOVA; ND; NE; IRB; VCF; N/NE; NJ; HPD; PCR; Ancestry-specific allele frequency; mtDNA; RM-MJ; Tobacco-related oral cancer; WB; Prolonged tobacco-chewers; mtD-Loop; YRI; SE; TrOC; NE2; NE1; Oral cancer susceptibility autosomal loci; BIC; NE3; BEB; IGSR; Migration analysis; HV1; OR; SSD; CI; YBP; K2P; TB; mtDNA-based marker; HD; Disease-associated admixture component
• ISSN: 0378-1119; 1879-0038; 1879-0038
• DOI: 10.1016/j.gene.2021.146098

•An updated prehistoric AMH dispersal route in and out of NE India has been unveiled.•TrOC-linked autosomal loci & mtDNA-based marker predicted feasible migration route.•Prehistoric AMH dispersal probably linked with the high TrOC prevalence in NE India.•Back-migration from SE Asia (∼4kya) most likely introduced the TrOC-causing traits.•MtDNA-HG 'R' significantly associated with the risk of TrOC (OR > 9.5) in NE India. Northeast (NE) India is a subject of debate for predicting its involvement in prehistoric anatomically modern human (AMH) dispersal. The unique lifestyle and genetic characteristics of native ethnic groups in this region are believed to be responsible for their susceptibility to tobacco-related oral cancer (TrOC). The present study assessed mitochondrial macro-haplogroup (mHG) diversity and TrOC susceptibility autosomal loci to evaluate the impact of prehistoric AMH dispersal on the present day's high TrOC prevalence in major NE Indian ethnics. We considered 175 unrelated individuals from 35 ethnic groups and previously published 374 sequences for sequencing-based assessment of mtDNA-based marker by subsequent analyses like haplogroup diversity, phylogenetic, genetic structure by AMOVA, and MDS, descriptive statistics of demographic parameters, and migration analysis. Besides, we selected prolonged tobacco-chewing 124 case-control individuals from similar ethnic backgrounds for genotyping 115 autosomal loci in Sequenom iPLEX MassARRAY™ platform and mined 1000genome data (n = 398) for consequent global admixture and ancestry-specific allele frequencies-based analyses. Our mtDNA-based findings suggested that NE populations were distinct from other Indian populations, owing to the first wave of migration from ancient southern China (∼54kya) and two successive spatial expansion events at ∼45kya and ∼43kya. Consequently, it probably acted as another source for prehistoric AMH dispersal in N/NE Asia. Besides, the second wave of back-migration from SE Asia (∼40kya) probably replaced the mitochondrial footprints of survivors from the first migrants and introduced the TrOC susceptibility traits in this region. Afterward, the autosomal marker-based observations on the transition of the disease-associated admixture component 'K6' from SE Asia reconfirmed these results. Moreover, we also observed that the mitochondrial mHG 'R' is significantly associated with the risk of TrOC (OR > 9.5) in NE India. Furthermore, the possible onset of the phenotypic expression of those traits was predicted at ∼4kya, thus, contributing to present-day's TrOC prevalence. This study reflects its uniqueness by revealing an updated AMH dispersal route for the peopling in and out of NE India, which probably introduced the disease-causing traits in the ancestral NE Indian population. Those traits were then imprinted in their genome to get transferred through their respective generations, forming the present-day's TrOC-prevalent NE Indian population.