Codon usage tabulated from the international DNA sequence databases

CUTG (codon usage tabulated from GenBank) is a comprehensive database for codon usage. The codon usage for each full-length protein gene has been calculated using the nucleotide sequence obtained from GenBank sequence database. The sum of the codon use of each organism has been also calculated. The...

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Bibliographic Details
Published inNucleic acids research Vol. 26; no. 1; p. 334
Main Authors Nakamura, Yasukazu, Gojobori, Takashi, Ikemura, Toshimichi
Format Journal Article
LanguageEnglish
Published England Oxford University Press 01.01.1998
Subjects
Animals
Base Sequence
Codon
Computer Communication Networks
Databases, Factual
DNA - chemistry
Proteins - genetics
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Summary:CUTG (codon usage tabulated from GenBank) is a comprehensive database for codon usage. The codon usage for each full-length protein gene has been calculated using the nucleotide sequence obtained from GenBank sequence database. The sum of the codon use of each organism has been also calculated. The data files can be obtained from anonymous ftp sites of DDBJ, DISC and EBI. The list of codonusage of genes in organisms was made searchableby name of organism through a web site http://www.dna.affrc.go.jp/~nakamura/CUTG.html The compilation is synchronized with major release of GenBank.
Bibliography:istex:0D9828A8E2350D4C772B71707F26BEDEB9472FBB
ark:/67375/HXZ-HQVHS8WW-D
ISSN:0305-1048
1362-4962
1362-4962
DOI:10.1093/nar/26.1.334