Japanese star anise ringspot-associated virus is a distinct emaravirus transmitted by the eriophyid mite (the family Diptilomiopidae)

• Published in: Journal of general plant pathology : JGPP Vol. 88; no. 1; pp. 69 - 80
• Main Authors: Shimomoto, Yoshifumi, Okada, Tomoyuki, Ikeda, Kenichi, Tatara, Akio, Hasegawa, Yusuke, Yanagisawa, Hironobu, Takeyama, Sawana, Hayashi, Kazusa, Yano, Kazutaka, Morita, Yasuaki, Kubota, Kenji
• Format: Journal Article
• Language: English
• Published: Tokyo Springer Japan 01.01.2022; Springer Nature B.V
• Subjects: Agriculture; Amino acid sequence; Amino acids; Biomedical and Life Sciences; Complementarity; Diptilomiopidae; Disease transmission; DNA-directed RNA polymerase; Emaravirus; Gene sequencing; Glycoproteins; Life Sciences; Microbiology; Mites; Movement protein; Next-generation sequencing; Nucleocapsids; Nucleotide sequence; Nucleotides; Plant Pathology; Prepolymers; Proteins; RNA polymerase; RNA-directed RNA polymerase; Transmission electron microscopy; Viral and Viroid Diseases; Virus-like particles; Viruses; JSARaV; Transmission test; High-throughput sequencing; Electron microscopy
• ISSN: 1345-2630; 1610-739X
• DOI: 10.1007/s10327-021-01038-1

Japanese star anise ( Illicium anisatum L., JSA) is seriously damaged by a ringspot disease in Japan. Herein, to determine the causal agent using high-throughput sequencing, we discovered viral RNAs associated with JSA ringspot disease. We then determined the complete or near-complete nucleotide sequences of these RNAs using Sanger sequencing and RACE. The complementary strand of viral RNAs 1, 2, 3, 4, and 5 encoded a single protein, which shared sequence identity with P1 (RNA-dependent RNA polymerase), P2 (glycoprotein precursor), P3 (nucleocapsid protein), P4 (movement protein), and a protein with unknown function of emaraviruses (genus Emaravirus ), respectively; however, the highest amino acid sequence identity for the P1–P5 proteins between JSARaV and known emaraviruses was 41.9%, 30.0%, 30.1%, 52.2%, and 38.0%, respectively, all of which were lower than the species demarcation criterion. Furthermore, RNA segments harbored conserved 12-nt terminal sequences at the 5′- and 3′-termini, and a high complementarity of approximately 20 nt in 5′- and 3′-terminal sequences. Transmission electron microscopy confirmed the presence of virus-like particles. JSA ringspot disease was found to be transmitted by an eriophyid mite (subclass Acari, superfamily Eriophyoidea) that belongs to the family Diptilomiopidae. Taken together, these results identified the virus responsible for the ringspot disease of JSA as a new member of the genus, Emaravirus , which we named as the Japanese star anise ringspot-associated virus (JSARaV). Moreover, this is the first report noting that eriophyid mites of the family Diptilomiopidae are capable of transmitting emaravirus.