The complete chloroplast genome sequence of Qercus pannosa

The first complete chloroplast genome (cpDNA) sequence of Quercus pannosa was determined from Illumina HiSeq pair-end sequencing data in this study. The cpDNA is 161,222 bp in length, contains a large single-copy region (LSC) of 90,522 bp and a small single-copy region (SSC) of 19,000 bp, which were...

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Bibliographic Details
Published inMitochondrial DNA. Part B. Resources Vol. 5; no. 2; pp. 1777 - 1778
Main Authors Ma, Jianzhong, Li, Yunqin, Yuan, Xiaolong, Luo, Ting, Wang, Yi
Format Journal Article
LanguageEnglish
Published Abingdon Taylor & Francis 02.04.2020
Taylor & Francis Ltd
Taylor & Francis Group
Subjects
chloroplast
Chloroplasts
Genomes
Illumina sequencing
Nucleotide sequence
phylogenetic analysis
Quercus
Quercus pannosa
rRNA
Transfer RNA
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Summary:The first complete chloroplast genome (cpDNA) sequence of Quercus pannosa was determined from Illumina HiSeq pair-end sequencing data in this study. The cpDNA is 161,222 bp in length, contains a large single-copy region (LSC) of 90,522 bp and a small single-copy region (SSC) of 19,000 bp, which were separated by a pair of inverted repeats (IR) regions of 25,850 bp. The genome contains 130 genes, including 85 protein-coding genes, 8 ribosomal RNA genes, and 37 transfer RNA genes. Further phylogenomic analysis showed that Q. pannosa and Q. edithiae clustered in a unique clade in Quercus genus.
ISSN:2380-2359
2380-2359
DOI:10.1080/23802359.2020.1750319