Isolation of a Novel Freshwater Agarolytic Cellvibrio sp. KY-YJ-3 and Characterization of Its Extracellular β-Agarase

• Published in: Journal of microbiology and biotechnology Vol. 20; no. 10; pp. 1378 - 1385
• Main Authors: Rhee, Y.J., Kyungpook National University, Daegu, Republic of Korea, Han, C.R., Kyungpook National University, Daegu, Republic of Korea, Kim, W.C., Kyungpook National University, Daegu, Republic of Korea, Jun, D.Y., Kyungpook National University, Daegu, Republic of Korea, Rhee, I.K., Kyungpook National University, Daegu, Republic of Korea, Kim, Y.H., Kyungpook National University, Daegu, Republic of Korea
• Format: Journal Article
• Language: English
• Published: Seoul Korean Society for Applied Microbiology 01.10.2010; 한국미생물·생명공학회
• Subjects: agarolytic Cellvibrio sp; Bacterial Proteins - chemistry; Bacterial Proteins - genetics; Bacterial Proteins - metabolism; beta-agarase; Biological and medical sciences; Biotechnology; Cellvibrio - classification; Cellvibrio - enzymology; Cellvibrio - genetics; Cellvibrio - isolation & purification; Enzyme Stability; Fresh Water - microbiology; Freshwater environment; Fundamental and applied biological sciences. Psychology; Glycoside Hydrolases - chemistry; Glycoside Hydrolases - genetics; Glycoside Hydrolases - metabolism; Kinetics; Molecular Sequence Data; Molecular Weight; neoagarooligosaccharide; Phylogeny; PURIFICACION; PURIFICATION; 생물학; agarolytic Cellvibrio sp; neoagarooligosaccharide; Purification; β-agarase; Enzyme; Fresh water; Extracellular; Glycosylases; Characterization; Freshwater environment; Glycosidases; Agarase; Hydrolases; Environment; Isolation
• ISSN: 1017-7825; 1738-8872
• DOI: 10.4014/jmb.1007.07010

A novel agarolytic bacterium, KY-YJ-3, producing extracellular agarase, was isolated from the freshwater sediment of the Sincheon River in Daegu, Korea. On the basis of Gram-staining data, morphology, and phylogenetic analysis of the 16S rDNA sequence, the isolate was identified as Cellvibrio sp. By ammonium sulfate precipitation followed by Toyopearl QAE-550C, Toyopearl HW-55F, and Mono-Q column chromatographies, the extracellular agarase in the culture fluid could be purified 120.2-fold with a yield of 8.1%. The specific activity of the purified agarase was 84.2 U/mg. The molecular mass of the purified agarase was 70 kDa as determined by dodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE). The optimal temperature and pH of the purified agarase were 35℃ and pH 7.0, respectively. The purified agarase failed to hydrolyze the other polysaccharide substrates, including carboxymethyl-cellulose, dextran, soluble starch, pectin, and polygalacturonic acid. Kinetic analysis of the agarose hydrolysis catalyzed by the purified agarase using thin-layer chromatography showed that the main products were neoagarobiose, neoagarotetraose, and neoagarohexaose. These results demonstrated that the newly isolated freshwater agarolytic bacterium KY-YJ-3 was a Cellvibrio sp., and could produce an extracellular β-agarase, which hydrolyzed agarose to yield neoagarobiose, neoagarotetraose, and neoagarohexaose as the main products.