Genomic Architecture of the Two Cold-Adapted Genera Exiguobacterium and Psychrobacter: Evidence of Functional Reduction in the Exiguobacterium antarcticum B7 genome

• Published in: Genome biology and evolution Vol. 10; no. 3; pp. 731 - 741
• Main Authors: Dias, Larissa M, Folador, Adriana R C, Oliveira, Amanda M, Ramos, Rommel T J, Silva, Artur, Baraúna, Rafael A
• Format: Journal Article
• Language: English
• Published: England Oxford University Press 01.03.2018
• Subjects: Psychrobacter; psychrotrophic; Exiguobacterium; extremophiles; comparative genomics; cold adaptation
• ISSN: 1759-6653; 1759-6653
• DOI: 10.1093/gbe/evy029

Exiguobacterium and Psychrobacter are bacterial genera with several cold-adapted species. These extremophiles are commonly isolated from the same habitats in Earth's cryosphere and have great ecological and biotechnological relevance. Thus, through comparative genomic analyses, it was possible to understand the functional diversity of these psychrotrophic and psychrophilic species and present new insights into the microbial adaptation to cold. The nucleotide identity between Exiguobacterium genomes was higher than 90%. Three genomic islands were identified in the E. antarcticum B7 genome. These islands contained genes involved in flagella biosynthesis and chemotaxis, as well as enzymes for carotenoid biosynthesis. Clustering of cold shock proteins by Ka/Ks ratio suggests the occurrence of a positive selection over these genes. Neighbour-joining clustering of complete genomes showed that the E. sibiricum was the most closely related to E. antarcticum . A total of 92 genes were shared between Exiguobacterium and Psychrobacter. A reduction in the genomic content of E. antarcticum B7 was observed. It presented the smallest genome size of its genus and a lower number of genes because of the loss of many gene families compared to the other genomes. In our study, eight genomes of Exiguobacterium and Psychrobacter were compared and analysed. Psychrobacter showed higher genomic plasticity and E. antarcticum B7 presented a large decrease in genomic content without changing its ability to grow in cold environments.