A novel jumbo Tenacibaculum maritimum lytic phage with head-fiber-like appendages

• Published in: Archives of virology Vol. 165; no. 2; pp. 303 - 311
• Main Authors: Kawato, Yasuhiko, Istiqomah, Indah, Gaafar, Alkhateib Y., Hanaoka, Makoto, Ishimaru, Katsuya, Yasuike, Motoshige, Nishiki, Issei, Nakamura, Yoji, Fujiwara, Atushi, Nakai, Toshihiro
• Format: Journal Article
• Language: English
• Published: Vienna Springer Vienna 01.02.2020; Springer Nature B.V
• Subjects: Animals; Aquaculture; Bacteriophages - genetics; Base Composition; Base Sequence - genetics; Biomedical and Life Sciences; Biomedicine; Cell surface; Contractility; Fishes - virology; Genetic relationship; Genome, Viral - genetics; Genomes; Infectious Diseases; Isometric; Japan; Medical Microbiology; Nucleotide sequence; Open reading frames; Open Reading Frames - genetics; Original Article; Phages; Phylogeny; Sequence Analysis, DNA - methods; Tenacibaculum; Tenacibaculum - genetics; Tentacles; Terminase; Transmission electron microscopy; Viral Proteins - genetics; Virology; Japan
• ISSN: 0304-8608; 1432-8798
• DOI: 10.1007/s00705-019-04485-6

A novel jumbo bacteriophage (myovirus) is described. The lytic phage of Tenacibaculum maritimum , which is the etiological agent of tenacibaculosis in a variety of farmed marine fish worldwide, was plaque-isolated from seawater around a fish aquaculture field in Japan. The phage had an isometric head 110–120 nm in diameter, from which several 50- to 100-nm-long flexible fiber-like appendages emanate, and a 150-nm-long rigid contractile tail. The full genomes of the two representative phages (PTm1 and PTm5) were 224,680 and 226,876 bp long, respectively, both with 29.7% GC content, and the number of predicted open reading frames (ORFs) was 308 and 306, respectively. The average nucleotide sequence identity between PTm1 and PTm5 was 99.95%, indicating they are quite similar to each other. A genetic relationship was found in 15.0–16.6% of the predicted ORFs among the T. maritimum phages PTm1 and PTm5, the Tenacibaculum spp. phage pT24, and the Sphingomonas paucimobilis phage PAU. Phylogenetic analysis based on the terminase large subunit genes revealed that these four phages (PTm1, PTm5, pT24 and PAU) are more closely related than the other 10 jumbo myoviruses that have similar genome sizes. Transmission electron microscopy observations suggest that the head fibers of the T. maritimum phage function as tentacles to search and recognize the host cell surface to facilitate infection.