Stereological quantification of microvessels using semiautomated evaluation of X-ray microtomography of hepatic vascular corrosion casts

• Published in: International journal for computer assisted radiology and surgery Vol. 11; no. 10; pp. 1803 - 1819
• Main Authors: Jiřík, Miroslav, Tonar, Zbyněk, Králíčková, Anna, Eberlová, Lada, Mírka, Hynek, Kochová, Petra, Gregor, Tomáš, Hošek, Petr, Svobodová, Miroslava, Rohan, Eduard, Králíčková, Milena, Liška, Václav
• Format: Journal Article
• Language: English
• Published: Berlin/Heidelberg Springer Berlin Heidelberg 01.10.2016; Springer Nature B.V
• Subjects: Animals; Anisotropy; Computer Imaging; Computer Science; Concentration (composition); Corrosion; Health Informatics; Image Interpretation, Computer-Assisted - methods; Imaging; Imaging, Three-Dimensional - methods; Liver - blood supply; Liver - diagnostic imaging; Medicine; Medicine & Public Health; Microvessels - diagnostic imaging; Original Article; Pattern Recognition and Graphics; Radiology; Sensitivity analysis; Software; Surgery; Swine; Vision; X ray microtomography; X-Ray Microtomography - methods; Porcine; Liver; X-ray microtomography; Microvessels; Stereology; Pig; Python
• ISSN: 1861-6410; 1861-6429
• DOI: 10.1007/s11548-016-1378-3

Purpose Quantitative description of hepatic microvascular bed could contribute to understanding perfusion CT imaging. Micro-CT is a useful method for the visualization and quantification of capillary-passable vascular corrosion casts. Our aim was to develop and validate open-source software for the statistical description of the vascular networks in micro-CT scans. Methods Porcine hepatic microvessels were injected with Biodur E20 resin, and the resulting corrosion casts were scanned with 1.9–4.7  μ m resolution. The microvascular network was quantified using newly developed QuantAn software both in randomly selected volume probes ( n = 10) and in arbitrarily outlined hepatic lobules ( n = 4). The volumes, surfaces, lengths, and numbers of microvessel segments were estimated and validated in the same data sets with manual stereological counting. Calculations of tortuosity, radius histograms, length histograms, exports of the skeletonized vascular network into open formats, and an assessment of the degree of their anisotropy were performed. Results Within hepatic lobules, the microvessels had a volume fraction of 0.13  ±  0.05, surface density of 21.0  ±  2.0  mm - 1 , length density of 169.0  ±  40.2  mm - 2 , and numerical density of 588.5  ±  283.1  mm - 3 . Sensitivity analysis of the automatic analysis to binary opening, closing, threshold offset, and aggregation radius of branching nodes was performed. Conclusion The software QuantAn and its source code are openly available to researchers working in the field of stochastic geometry of microvessels in micro-CT scans or other three-dimensional imaging methods. The implemented methods comply with reproducible stereological techniques, and they were highly consistent with manual counting. Preliminary morphometrics of the classical hepatic lobules in pig were provided.