Whole-genome sequence and genome annotation of Xanthomonas citri pv. mangiferaeindicae, causal agent of bacterial black spot on Mangifera indica
A newly isolated strain XC01 was identified as Xanthomonas citri pv. mangiferaeindicae , isolated from an infected mango fruit in Guangxi, China. The complete genome sequence of XC01 was carried out using the PacBio RSII platform. The genome contains a circular chromosome with 3,865,165 bp, 3442 pro...
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| Published in | Archives of microbiology Vol. 200; no. 5; pp. 835 - 840 |
|---|---|
| Main Authors | , , |
| Format | Journal Article |
| Language | English |
| Published |
Berlin/Heidelberg
Springer Berlin Heidelberg
01.07.2018
Springer Nature B.V |
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| Abstract | A newly isolated strain XC01 was identified as
Xanthomonas citri
pv.
mangiferaeindicae
, isolated from an infected mango fruit in Guangxi, China. The complete genome sequence of XC01 was carried out using the PacBio RSII platform. The genome contains a circular chromosome with 3,865,165 bp, 3442 protein-coding genes, 53 tRNAs, and 2 rRNA operons. Phylogenetic analysis revealed that this pathogen is very close to the soybeans bacterial pustule pathogen
X. citri
pv.
glycines
CFBP 2526, with a completely different host range. The genome sequence of XC01 may shed a highlight genes with a demonstrated or proposed role in on the pathogenesis. |
|---|---|
| AbstractList | A newly isolated strain XC01 was identified as Xanthomonas citri pv. mangiferaeindicae, isolated from an infected mango fruit in Guangxi, China. The complete genome sequence of XC01 was carried out using the PacBio RSII platform. The genome contains a circular chromosome with 3,865,165 bp, 3442 protein-coding genes, 53 tRNAs, and 2 rRNA operons. Phylogenetic analysis revealed that this pathogen is very close to the soybeans bacterial pustule pathogen X. citri pv. glycines CFBP 2526, with a completely different host range. The genome sequence of XC01 may shed a highlight genes with a demonstrated or proposed role in on the pathogenesis. A newly isolated strain XC01 was identified as Xanthomonas citri pv. mangiferaeindicae, isolated from an infected mango fruit in Guangxi, China. The complete genome sequence of XC01 was carried out using the PacBio RSII platform. The genome contains a circular chromosome with 3,865,165 bp, 3442 protein-coding genes, 53 tRNAs, and 2 rRNA operons. Phylogenetic analysis revealed that this pathogen is very close to the soybeans bacterial pustule pathogen X. citri pv. glycines CFBP 2526, with a completely different host range. The genome sequence of XC01 may shed a highlight genes with a demonstrated or proposed role in on the pathogenesis. A newly isolated strain XC01 was identified as Xanthomonas citri pv. mangiferaeindicae , isolated from an infected mango fruit in Guangxi, China. The complete genome sequence of XC01 was carried out using the PacBio RSII platform. The genome contains a circular chromosome with 3,865,165 bp, 3442 protein-coding genes, 53 tRNAs, and 2 rRNA operons. Phylogenetic analysis revealed that this pathogen is very close to the soybeans bacterial pustule pathogen X. citri pv. glycines CFBP 2526, with a completely different host range. The genome sequence of XC01 may shed a highlight genes with a demonstrated or proposed role in on the pathogenesis. |
| Author | Zhan, Ru-lin Liu, Feng Ou, Xiong-chang |
| Author_xml | – sequence: 1 givenname: Feng surname: Liu fullname: Liu, Feng email: liufengneau@163.com organization: Southern Subtropical Crops Research Institute, Chinese Academy of Tropical Agricultural Sciences, Key Laboratory of Tropical Fruit Biology, Ministry of Agriculture – sequence: 2 givenname: Xiong-chang surname: Ou fullname: Ou, Xiong-chang organization: Southern Subtropical Crops Research Institute, Chinese Academy of Tropical Agricultural Sciences, Key Laboratory of Tropical Fruit Biology, Ministry of Agriculture – sequence: 3 givenname: Ru-lin surname: Zhan fullname: Zhan, Ru-lin organization: Southern Subtropical Crops Research Institute, Chinese Academy of Tropical Agricultural Sciences, Key Laboratory of Tropical Fruit Biology, Ministry of Agriculture |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/29666886$$D View this record in MEDLINE/PubMed |
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| CitedBy_id | crossref_primary_10_1094_PDIS_08_21_1714_A crossref_primary_10_1007_s10482_019_01323_2 crossref_primary_10_1128_mSphere_00301_20 crossref_primary_10_1038_s41598_018_37886_9 crossref_primary_10_1111_efp_12860 |
| Cites_doi | 10.1038/75556 10.1186/1471-2164-9-75 10.1094/MPMI-23-2-0198 10.1101/gr.1224503 10.1093/bioinformatics/btm404 10.6090/jarq.39.275 10.1093/nar/gkh063 10.1099/00207713-45-3-472 10.1093/nar/25.5.0955 10.1128/AEM.00028-11 10.1093/nar/gkm160 10.1080/07352689.2012.743399 10.1128/genomeA.01036-13 10.1038/nmeth.2474 10.1093/nar/28.1.33 10.1186/gb-2002-3-10-comment2010 10.1094/PDIS.2001.85.9.928 10.1094/MPMI.2000.13.4.394 10.1093/nar/gkj047 10.1093/nar/gkh131 10.1186/1471-2105-11-119 10.1079/9780851993904.0327 |
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| References | Ochiai, Inoue, Takeya, Sasaki, Kaku (CR14) 2005; 39 Patel, Moniz, Kulkarni (CR16) 1948; 17 Hyatt, Chen, Locascio, Land, Larimer, Hauser (CR8) 2010; 11 Aziz, Bartels, Best, DeJongh, Disz, Edwards (CR3) 2008; 9 Chin, Alexander, Marks, Klammer, Drake, Heiner (CR4) 2013; 10 Cummings (CR6) 2014 CR17 Darrasse, Bolot, Serres-Giardi, Charbit, Charbit, Boureau, Fisher-Le Saux, Arlat, Gagnevin, Koebnik, Noël, Carrère, Jacques (CR700) 2013; 1 Lowe, Eddy (CR13) 1997; 25 Apweiler, Bairoch, Wu, Yeh (CR1) 2004; 32 Clarke, Cai, Studholme, Guttman, Vinatzer (CR5) 2010; 23 Ashburner, Ball, Blake, Botstein (CR2) 2000; 25 Tatusov, Galperin, Natale, Koonin (CR21) 2000; 28 Kanehisa, Goto, Kawashima, Hattori (CR9) 2004; 32 Vauterin, Hoste, Kersters, Swings (CR23) 1995; 45 Larkin, Blackshields, Brown, Chenna, McGettigan, McWilliam, Valentin (CR11) 2007; 23 Singh, Singh, Sane, Nath (CR20) 2013; 32 Palmer, McCombie. (CR15) 2002; 3 Ray, Rajeshwari, Sonti (CR19) 2000; 13 Gagnevin, Pruvost (CR7) 2001; 85 Winnenburg, Baldwin, Urban, Rawlings, Kohler, Hammond-Kosack (CR24) 2006; 34 Ploetz, Prakash, Litz (CR18) 1997 Li, Stoeckert, Roos (CR12) 2003; 13 Triplett, Hamilton, Buell, Tisserat, Verdier, Zink, Leach (CR22) 2011; 77 Lagesen, Hallin, Rødland, Stærfeldt, Rognes, Ussery (CR10) 2007; 35 L Li (1513_CR12) 2003; 13 Z Singh (1513_CR20) 2013; 32 1513_CR17 MK Patel (1513_CR16) 1948; 17 L Gagnevin (1513_CR7) 2001; 85 M Kanehisa (1513_CR9) 2004; 32 RK Aziz (1513_CR3) 2008; 9 L Vauterin (1513_CR23) 1995; 45 TM Lowe (1513_CR13) 1997; 25 MA Larkin (1513_CR11) 2007; 23 K Lagesen (1513_CR10) 2007; 35 D Hyatt (1513_CR8) 2010; 11 LR Triplett (1513_CR22) 2011; 77 R Apweiler (1513_CR1) 2004; 32 A Darrasse (1513_CR700) 2013; 1 SK Ray (1513_CR19) 2000; 13 MP Cummings (1513_CR6) 2014 RC Ploetz (1513_CR18) 1997 LE Palmer (1513_CR15) 2002; 3 RL Tatusov (1513_CR21) 2000; 28 R Winnenburg (1513_CR24) 2006; 34 M Ashburner (1513_CR2) 2000; 25 CS Chin (1513_CR4) 2013; 10 H Ochiai (1513_CR14) 2005; 39 CR Clarke (1513_CR5) 2010; 23 |
| References_xml | – start-page: 281 year: 1997 end-page: 327 ident: CR18 article-title: Foliar, floral and soil borne diseases publication-title: The mango: botany, production and uses contributor: fullname: Litz – volume: 25 start-page: 25 issue: 1 year: 2000 end-page: 29 ident: CR2 article-title: Gene ontology: tool for the unification of biology publication-title: Nat Genetics doi: 10.1038/75556 contributor: fullname: Botstein – volume: 9 start-page: 75 year: 2008 ident: CR3 article-title: The RAST server: rapid annotations using subsystems technology publication-title: BMC Genom doi: 10.1186/1471-2164-9-75 contributor: fullname: Edwards – volume: 23 start-page: 198 year: 2010 end-page: 210 ident: CR5 article-title: strains naturally lacking the classical e hrp/hrc locus are common leaf colonizers equipped with an atypical type III secretion system publication-title: Mol Plant Microbe Interact doi: 10.1094/MPMI-23-2-0198 contributor: fullname: Vinatzer – volume: 13 start-page: 2178 year: 2003 end-page: 2189 ident: CR12 article-title: OrthoMCL: identification of ortholog groups for eukaryotic genomes publication-title: Genom Res doi: 10.1101/gr.1224503 contributor: fullname: Roos – volume: 23 start-page: 2947 year: 2007 end-page: 2948 ident: CR11 article-title: ClustalW2 and ClustalX version 2 publication-title: Bioinformatics doi: 10.1093/bioinformatics/btm404 contributor: fullname: Valentin – volume: 39 start-page: 275 issue: 4 year: 2005 end-page: 287 ident: CR14 article-title: Genome sequence of pv. suggests contribution of large numbers of effector genes and insertion sequences to its race diversity publication-title: JARQ doi: 10.6090/jarq.39.275 contributor: fullname: Kaku – volume: 32 start-page: 277 year: 2004 end-page: 280 ident: CR9 article-title: The KEGG resource for deciphering the genome publication-title: Nucleic Acids Res doi: 10.1093/nar/gkh063 contributor: fullname: Hattori – volume: 45 start-page: 472 year: 1995 end-page: 489 ident: CR23 article-title: Reclassification of xanthomonas publication-title: Int J Syst Bacteriol doi: 10.1099/00207713-45-3-472 contributor: fullname: Swings – volume: 25 start-page: 955 year: 1997 end-page: 964 ident: CR13 article-title: tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence publication-title: Nucleic Acids Res doi: 10.1093/nar/25.5.0955 contributor: fullname: Eddy – volume: 77 start-page: 3930 year: 2011 end-page: 3937 ident: CR22 article-title: Genomic analysis of isolates from rice grown in the United States reveals substantial divergence from known pathovars publication-title: Appl Environ Microbiol doi: 10.1128/AEM.00028-11 contributor: fullname: Leach – volume: 35 start-page: 3100 year: 2007 end-page: 3108 ident: CR10 article-title: RNAmmer: consistent and rapid annotation of ribosomal RNA genes publication-title: Nucleic Acids Res doi: 10.1093/nar/gkm160 contributor: fullname: Ussery – volume: 32 start-page: 217 issue: 4 year: 2013 end-page: 236 ident: CR20 article-title: Mango-postharvest biology and biotechnology publication-title: Crit Rev Plant Sci doi: 10.1080/07352689.2012.743399 contributor: fullname: Nath – volume: 1 start-page: e01036 issue: 6 year: 2013 end-page: 13 ident: CR700 article-title: High-quality draft genome sequences of Xanthomonas axonopodis pv. glycines strains CFBP 2526 and CFBP 7119 publication-title: Genome Announcements doi: 10.1128/genomeA.01036-13 contributor: fullname: Jacques – volume: 10 start-page: 563 year: 2013 end-page: 569 ident: CR4 article-title: Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data publication-title: Nat Methods doi: 10.1038/nmeth.2474 contributor: fullname: Heiner – volume: 28 start-page: 33 issue: 1 year: 2000 end-page: 36 ident: CR21 article-title: The COG database: a tool for genome-scale analysis of protein functions and evolution publication-title: Nucleic Acids Res doi: 10.1093/nar/28.1.33 contributor: fullname: Koonin – ident: CR17 – volume: 3 start-page: 201 year: 2002 ident: CR15 article-title: On the importance of being finished publication-title: Genom Biol doi: 10.1186/gb-2002-3-10-comment2010 contributor: fullname: McCombie. – volume: 85 start-page: 928 issue: 9 year: 2001 end-page: 935 ident: CR7 article-title: Epidemiology and control of mango bacterial black spot publication-title: Plant Dis doi: 10.1094/PDIS.2001.85.9.928 contributor: fullname: Pruvost – volume: 13 start-page: 394 year: 2000 end-page: 401 ident: CR19 article-title: Mutants of deficient in general secretory pathway are virulent deficient and unable to secrete xylase. Mol publication-title: Plant Microbe Interact doi: 10.1094/MPMI.2000.13.4.394 contributor: fullname: Sonti – volume: 34 start-page: 459 year: 2006 end-page: 464 ident: CR24 article-title: PHI-base: a new database for pathogen host interactions publication-title: Nucleic Acids Res doi: 10.1093/nar/gkj047 contributor: fullname: Hammond-Kosack – volume: 32 start-page: 115 year: 2004 end-page: 119 ident: CR1 article-title: UniProt: the universal protein knowledgebase publication-title: Nucleic Acids Res doi: 10.1093/nar/gkh131 contributor: fullname: Yeh – year: 2014 ident: CR6 publication-title: PAUP*(Phylogenetic analysis using parsimony (*and other methods)). 4.0 ed contributor: fullname: Cummings – volume: 17 start-page: 189 issue: 6 year: 1948 end-page: 190 ident: CR16 article-title: A new bacterial disease of L. publication-title: Curr Sci contributor: fullname: Kulkarni – volume: 11 start-page: 119 year: 2010 ident: CR8 article-title: Prodigal: prokaryotic gene recognition and translation initiation site identification publication-title: BMC Bioinform doi: 10.1186/1471-2105-11-119 contributor: fullname: Hauser – volume: 9 start-page: 75 year: 2008 ident: 1513_CR3 publication-title: BMC Genom doi: 10.1186/1471-2164-9-75 contributor: fullname: RK Aziz – volume: 13 start-page: 2178 year: 2003 ident: 1513_CR12 publication-title: Genom Res doi: 10.1101/gr.1224503 contributor: fullname: L Li – start-page: 281 volume-title: The mango: botany, production and uses year: 1997 ident: 1513_CR18 contributor: fullname: RC Ploetz – volume: 34 start-page: 459 year: 2006 ident: 1513_CR24 publication-title: Nucleic Acids Res doi: 10.1093/nar/gkj047 contributor: fullname: R Winnenburg – volume: 23 start-page: 198 year: 2010 ident: 1513_CR5 publication-title: Mol Plant Microbe Interact doi: 10.1094/MPMI-23-2-0198 contributor: fullname: CR Clarke – ident: 1513_CR17 doi: 10.1079/9780851993904.0327 – volume: 77 start-page: 3930 year: 2011 ident: 1513_CR22 publication-title: Appl Environ Microbiol doi: 10.1128/AEM.00028-11 contributor: fullname: LR Triplett – volume: 32 start-page: 277 year: 2004 ident: 1513_CR9 publication-title: Nucleic Acids Res doi: 10.1093/nar/gkh063 contributor: fullname: M Kanehisa – volume: 10 start-page: 563 year: 2013 ident: 1513_CR4 publication-title: Nat Methods doi: 10.1038/nmeth.2474 contributor: fullname: CS Chin – volume: 25 start-page: 25 issue: 1 year: 2000 ident: 1513_CR2 publication-title: Nat Genetics doi: 10.1038/75556 contributor: fullname: M Ashburner – volume: 11 start-page: 119 year: 2010 ident: 1513_CR8 publication-title: BMC Bioinform doi: 10.1186/1471-2105-11-119 contributor: fullname: D Hyatt – volume: 32 start-page: 217 issue: 4 year: 2013 ident: 1513_CR20 publication-title: Crit Rev Plant Sci doi: 10.1080/07352689.2012.743399 contributor: fullname: Z Singh – volume: 45 start-page: 472 year: 1995 ident: 1513_CR23 publication-title: Int J Syst Bacteriol doi: 10.1099/00207713-45-3-472 contributor: fullname: L Vauterin – volume: 85 start-page: 928 issue: 9 year: 2001 ident: 1513_CR7 publication-title: Plant Dis doi: 10.1094/PDIS.2001.85.9.928 contributor: fullname: L Gagnevin – volume: 3 start-page: 201 year: 2002 ident: 1513_CR15 publication-title: Genom Biol doi: 10.1186/gb-2002-3-10-comment2010 contributor: fullname: LE Palmer – volume: 35 start-page: 3100 year: 2007 ident: 1513_CR10 publication-title: Nucleic Acids Res doi: 10.1093/nar/gkm160 contributor: fullname: K Lagesen – volume: 28 start-page: 33 issue: 1 year: 2000 ident: 1513_CR21 publication-title: Nucleic Acids Res doi: 10.1093/nar/28.1.33 contributor: fullname: RL Tatusov – volume: 23 start-page: 2947 year: 2007 ident: 1513_CR11 publication-title: Bioinformatics doi: 10.1093/bioinformatics/btm404 contributor: fullname: MA Larkin – volume-title: PAUP*(Phylogenetic analysis using parsimony (*and other methods)). 4.0 ed year: 2014 ident: 1513_CR6 contributor: fullname: MP Cummings – volume: 25 start-page: 955 year: 1997 ident: 1513_CR13 publication-title: Nucleic Acids Res doi: 10.1093/nar/25.5.0955 contributor: fullname: TM Lowe – volume: 39 start-page: 275 issue: 4 year: 2005 ident: 1513_CR14 publication-title: JARQ doi: 10.6090/jarq.39.275 contributor: fullname: H Ochiai – volume: 13 start-page: 394 year: 2000 ident: 1513_CR19 publication-title: Plant Microbe Interact doi: 10.1094/MPMI.2000.13.4.394 contributor: fullname: SK Ray – volume: 32 start-page: 115 year: 2004 ident: 1513_CR1 publication-title: Nucleic Acids Res doi: 10.1093/nar/gkh131 contributor: fullname: R Apweiler – volume: 17 start-page: 189 issue: 6 year: 1948 ident: 1513_CR16 publication-title: Curr Sci contributor: fullname: MK Patel – volume: 1 start-page: e01036 issue: 6 year: 2013 ident: 1513_CR700 publication-title: Genome Announcements doi: 10.1128/genomeA.01036-13 contributor: fullname: A Darrasse |
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| Snippet | A newly isolated strain XC01 was identified as
Xanthomonas citri
pv.
mangiferaeindicae
, isolated from an infected mango fruit in Guangxi, China. The complete... A newly isolated strain XC01 was identified as Xanthomonas citri pv. mangiferaeindicae, isolated from an infected mango fruit in Guangxi, China. The complete... |
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| SubjectTerms | Annotations Biochemistry Biomedical and Life Sciences Biotechnology Cell Biology Ecology Genes Genomes Host range Life Sciences Microbial Ecology Microbiology Nucleotide sequence Operons Pathogenesis Pathogens Phylogeny rRNA Short Communication Soybeans Spot Xanthomonas citri |
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| Title | Whole-genome sequence and genome annotation of Xanthomonas citri pv. mangiferaeindicae, causal agent of bacterial black spot on Mangifera indica |
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