Whole-genome sequence and genome annotation of Xanthomonas citri pv. mangiferaeindicae, causal agent of bacterial black spot on Mangifera indica

A newly isolated strain XC01 was identified as Xanthomonas citri pv. mangiferaeindicae , isolated from an infected mango fruit in Guangxi, China. The complete genome sequence of XC01 was carried out using the PacBio RSII platform. The genome contains a circular chromosome with 3,865,165 bp, 3442 pro...

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Published inArchives of microbiology Vol. 200; no. 5; pp. 835 - 840
Main Authors Liu, Feng, Ou, Xiong-chang, Zhan, Ru-lin
Format Journal Article
LanguageEnglish
Published Berlin/Heidelberg Springer Berlin Heidelberg 01.07.2018
Springer Nature B.V
Subjects
Annotations
Biochemistry
Biomedical and Life Sciences
Biotechnology
Cell Biology
Ecology
Genes
Genomes
Host range
Life Sciences
Microbial Ecology
Microbiology
Nucleotide sequence
Operons
Pathogenesis
Pathogens
Phylogeny
rRNA
Short Communication
Soybeans
Spot
Xanthomonas citri
Complete genome sequence
Mango
pv
Xanthomonas citri pv. mangiferaeindicae
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Summary:A newly isolated strain XC01 was identified as Xanthomonas citri pv. mangiferaeindicae , isolated from an infected mango fruit in Guangxi, China. The complete genome sequence of XC01 was carried out using the PacBio RSII platform. The genome contains a circular chromosome with 3,865,165 bp, 3442 protein-coding genes, 53 tRNAs, and 2 rRNA operons. Phylogenetic analysis revealed that this pathogen is very close to the soybeans bacterial pustule pathogen X. citri pv. glycines CFBP 2526, with a completely different host range. The genome sequence of XC01 may shed a highlight genes with a demonstrated or proposed role in on the pathogenesis.
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ISSN:0302-8933
1432-072X
DOI:10.1007/s00203-018-1513-3