In Silico Analysis of a GH3 β-Glucosidase from Microcystis aeruginosa CACIAM 03

• Published in: Microorganisms (Basel) Vol. 11; no. 4; p. 998
• Main Authors: Serra, Gustavo Marques, Siqueira, Andrei Santos, de Molfetta, Fábio Alberto, Santos, Agenor Valadares, Xavier, Luciana Pereira
• Format: Journal Article
• Language: English
• Published: Switzerland MDPI AG 11.04.2023; MDPI
• Subjects: Amino acids; Binding; Bioconversion; Biodegradation; Biomass; Cellobiose; cellulose hydrolysis; comparative modeling; Cyanobacteria; Degradation; Energy; Enzymes; Free energy; Glucosidase; Homology; Ligands; Lignocellulose; Metabolites; Microcystis; Microcystis aeruginosa; Molecular docking; Molecular dynamics; Physicochemical properties; Proteins; Secondary metabolites; Servers; Simulation; β-Glucosidase; Brazil; cellulose hydrolysis; Microcystis aeruginosa; comparative modeling; molecular dynamics; β-glucosidase; cyanobacteria
• ISSN: 2076-2607; 2076-2607
• DOI: 10.3390/microorganisms11040998

Cyanobacteria are rich sources of secondary metabolites and have the potential to be excellent industrial enzyme producers. β-glucosidases are extensively employed in processing biomass degradation as they mediate the most crucial step of bioconversion of cellobiose (CBI), hence controlling the efficiency and global rate of biomass hydrolysis. However, the production and availability of these enzymes derived from cyanobacteria remains limited. In this study, we evaluated the β-glucosidase from CACIAM 03 (MaBgl3) and its potential for bioconversion of cellulosic biomass by analyzing primary/secondary structures, predicting physicochemical properties, homology modeling, molecular docking, and simulations of molecular dynamics (MD). The results showed that MaBgl3 derives from an N-terminal domain folded as a distorted β-barrel, which contains the conserved His-Asp catalytic dyad often found in glycosylases of the GH3 family. The molecular docking results showed relevant interactions with Asp81, Ala271 and Arg444 residues that contribute to the binding process during MD simulation. Moreover, the MD simulation of the MaBgl3 was stable, shown by analyzing the root mean square deviation (RMSD) values and observing favorable binding free energy in both complexes. In addition, experimental data suggest that MaBgl3 could be a potential enzyme for cellobiose-hydrolyzing degradation.