Structures of a Phosphoryl Derivative of 4-Allyl-2,4-dihydro-3H-1,2,4-triazole-3-thione: An Illustrative Example of Conformational Polymorphism

• Published in: Crystals (Basel) Vol. 11; no. 9; p. 1126
• Main Authors: Fedyanin, Ivan V., Samigullina, Aida I., Krutov, Ivan A., Gavrilova, Elena L., Zakharychev, Dmitry V.
• Format: Journal Article
• Language: English
• Published: Basel MDPI AG 01.09.2021
• Subjects: Approximation; Bonding strength; conformational polymorphism; Crystal lattices; Crystal structure; Crystallization; Crystallography; Data collection; Dimers; Experiments; Hydrogen; Keywords; lattice energy; Molecular conformation; molecular structure; Packaging; Phase transitions; Polymorphism; Room temperature; Single crystals; Software packages; Stability analysis; supramolecular synthons; Triazoles
• ISSN: 2073-4352; 2073-4352
• DOI: 10.3390/cryst11091126

Two polymorphic forms of a conformationally flexible molecule, 5-[(Diphenylphosphoryl)methyl]-4-(prop-2-en-1-yl)-2,4-dihydro-3H-1,2,4-triazole-3-thione, were obtained by crystallization and characterized by X-ray diffraction analysis and differential scanning calorimetry. The relative stability of polymorphic forms was estimated with DFT calculations of crystal structures and isolated molecules. It turns out, that in the first more dense polymorph with higher cohesion energy and crystal lattice energy, the molecule adopts an energetically unfavorable conformation, and forms dimers with lower H-bond strength, as compared to the second polymorph. On the other hand, in the second polymorph, the molecule adopts almost the lowest-energy conformation and forms infinite chains via strong H-bonds. The first form that seems to be more thermodynamically stable at room temperature transforms into the second form via two endothermic phase transitions; the apparent irreversibility of the transition is due to high energy difference between the molecular conformations in crystals.