Integrative transcriptomics and proteomics analysis constructs a new molecular model for ovule abortion in the female-sterile line of Pinus tabuliformis Carr
•In SL ovules, low expressions of MCM complex, etc. led to abnormal DNA replication.•The expressions of PARP2, etc. implied the accumulation of DNA DSBs.•SL ovules failed to repair the DNA damage, and the PCD occurred.•The deficiency of ETF-QO hindered the progress of FNMM.•FNMM stopped, which resul...
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Published in | Plant science (Limerick) Vol. 294; p. 110462 |
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Main Authors | , , , , , |
Format | Journal Article |
Language | English |
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01.05.2020
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Abstract | •In SL ovules, low expressions of MCM complex, etc. led to abnormal DNA replication.•The expressions of PARP2, etc. implied the accumulation of DNA DSBs.•SL ovules failed to repair the DNA damage, and the PCD occurred.•The deficiency of ETF-QO hindered the progress of FNMM.•FNMM stopped, which resulted in the ovule abortion of SL.
Ovule development is critical to plant reproduction and free nuclear mitosis of megagametophyte (FNMM) is vital for ovule development. However, most results of ovule development were based on the studies in angiosperms, and its molecular regulation remained largely unknown in gymnosperms, particularly, during FNMM. In this context, we studied the genome-wide difference between sterile line (SL) and fertile line (FL) ovules using transcriptomics and proteomics approaches in Pinus tabuliformis Carr. Comparative analyses revealed that genes involved in DNA replication, DNA damage repair, Cell cycle, Apoptosis and Energy metabolism were highlighted. Further results showed the low expressions of MCM 2-7, RRM1, etc. perhaps led to abnormal DNA replication and damage repair, and the significantly different expressions of PARP2, CCs1, CCs3, etc. implied that the accumulated DNA double-stranded breaks were failed to be repaired and the cell cycle was arrested at G2/M in SL ovules, potentially resulting in the occurrence of apoptosis. Moreover, the deficiency of ETF-QO might hinder FNMM. Consequently, FNMM stopped and ovule aborted in SL ovules. Our results suggested a selective regulatory mechanism led to FNMM half-stop and ovule abortion in P. tabuliformis and these insights could be exploited to investigate the molecular regulations of ovule development in woody gymnosperms. |
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AbstractList | Ovule development is critical to plant reproduction and free nuclear mitosis of megagametophyte (FNMM) is vital for ovule development. However, most results of ovule development were based on the studies in angiosperms, and its molecular regulation remained largely unknown in gymnosperms, particularly, during FNMM. In this context, we studied the genome-wide difference between sterile line (SL) and fertile line (FL) ovules using transcriptomics and proteomics approaches in Pinus tabuliformis Carr. Comparative analyses revealed that genes involved in DNA replication, DNA damage repair, Cell cycle, Apoptosis and Energy metabolism were highlighted. Further results showed the low expressions of MCM 2-7, RRM1, etc. perhaps led to abnormal DNA replication and damage repair, and the significantly different expressions of PARP2, CCs1, CCs3, etc. implied that the accumulated DNA double-stranded breaks were failed to be repaired and the cell cycle was arrested at G2/M in SL ovules, potentially resulting in the occurrence of apoptosis. Moreover, the deficiency of ETF-QO might hinder FNMM. Consequently, FNMM stopped and ovule aborted in SL ovules. Our results suggested a selective regulatory mechanism led to FNMM half-stop and ovule abortion in P. tabuliformis and these insights could be exploited to investigate the molecular regulations of ovule development in woody gymnosperms. •In SL ovules, low expressions of MCM complex, etc. led to abnormal DNA replication.•The expressions of PARP2, etc. implied the accumulation of DNA DSBs.•SL ovules failed to repair the DNA damage, and the PCD occurred.•The deficiency of ETF-QO hindered the progress of FNMM.•FNMM stopped, which resulted in the ovule abortion of SL. Ovule development is critical to plant reproduction and free nuclear mitosis of megagametophyte (FNMM) is vital for ovule development. However, most results of ovule development were based on the studies in angiosperms, and its molecular regulation remained largely unknown in gymnosperms, particularly, during FNMM. In this context, we studied the genome-wide difference between sterile line (SL) and fertile line (FL) ovules using transcriptomics and proteomics approaches in Pinus tabuliformis Carr. Comparative analyses revealed that genes involved in DNA replication, DNA damage repair, Cell cycle, Apoptosis and Energy metabolism were highlighted. Further results showed the low expressions of MCM 2-7, RRM1, etc. perhaps led to abnormal DNA replication and damage repair, and the significantly different expressions of PARP2, CCs1, CCs3, etc. implied that the accumulated DNA double-stranded breaks were failed to be repaired and the cell cycle was arrested at G2/M in SL ovules, potentially resulting in the occurrence of apoptosis. Moreover, the deficiency of ETF-QO might hinder FNMM. Consequently, FNMM stopped and ovule aborted in SL ovules. Our results suggested a selective regulatory mechanism led to FNMM half-stop and ovule abortion in P. tabuliformis and these insights could be exploited to investigate the molecular regulations of ovule development in woody gymnosperms. |
ArticleNumber | 110462 |
Author | Li, Wenhai Zheng, Caixia Gong, Zaixin Feng, Jun Yao, Yang Zhang, Min |
Author_xml | – sequence: 1 givenname: Min surname: Zhang fullname: Zhang, Min – sequence: 2 givenname: Wenhai surname: Li fullname: Li, Wenhai – sequence: 3 givenname: Jun surname: Feng fullname: Feng, Jun – sequence: 4 givenname: Zaixin surname: Gong fullname: Gong, Zaixin – sequence: 5 givenname: Yang surname: Yao fullname: Yao, Yang – sequence: 6 givenname: Caixia surname: Zheng fullname: Zheng, Caixia email: zhengcx@bjfu.edu.cn |
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CitedBy_id | crossref_primary_10_1007_s10142_023_01264_0 crossref_primary_10_3389_fgene_2021_758209 crossref_primary_10_1007_s11240_022_02322_4 crossref_primary_10_1093_jxb_erae102 crossref_primary_10_3390_f11121367 crossref_primary_10_3389_fpls_2021_707286 crossref_primary_10_1186_s12870_023_04102_4 |
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Keywords | dUTP RPKM RNA-seq KEGG CCs3 RFC3 PARP2 SMC CMT SLe ss-DNA PRI1 RNase H2B Free nuclear mitosis SLl RF ds-DNA DNA MTase cor-DEGs RR DNA-PKcs FG dTTP PCNA CytC FL dNTP FNMM ETF-QO Female-sterile mutant MET1 FDR POLD1 SL FLe DSBs CCs1 RRM1 Megagametophyte FLl CDKA GO RPA1 RPA2 Pinus tabuliformis Carr CDC2 Integrative analysis POLA1 Ovule abortion CHROMO MCM POLE2 iTRAQ DEPs DETs DUTPase |
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Snippet | •In SL ovules, low expressions of MCM complex, etc. led to abnormal DNA replication.•The expressions of PARP2, etc. implied the accumulation of DNA DSBs.•SL... Ovule development is critical to plant reproduction and free nuclear mitosis of megagametophyte (FNMM) is vital for ovule development. However, most results of... |
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SubjectTerms | Female-sterile mutant Free nuclear mitosis Integrative analysis Megagametophyte Ovule abortion Pinus tabuliformis Carr |
Title | Integrative transcriptomics and proteomics analysis constructs a new molecular model for ovule abortion in the female-sterile line of Pinus tabuliformis Carr |
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