Semi-automated quantification of axonal densities in labeled CNS tissue

• Published in: Journal of neuroscience methods Vol. 155; no. 2; pp. 172 - 179
• Main Authors: Grider, Michael H., Chen, Qin, David Shine, H.
• Format: Journal Article
• Language: English
• Published: Netherlands Elsevier B.V 15.09.2006
• Subjects: Algorithms; Animals; Automatic Data Processing - methods; Axon detection; Axon measurement; Axonal growth; Axons - physiology; Biotin - analogs & derivatives; Biotin - metabolism; Brain-Derived Neurotrophic Factor - biosynthesis; Central Nervous System - cytology; Central Nervous System - drug effects; Central Nervous System - virology; Cerebral Cortex - injuries; Cerebral Cortex - metabolism; Dextrans - metabolism; Genetic Vectors - physiology; Green Fluorescent Proteins - biosynthesis; Image analysis; Image Processing, Computer-Assisted - methods; Neurons - cytology; Neurons - drug effects; Neurons - virology; Neurotrophin 3 - biosynthesis; p-Chloroamphetamine - pharmacology; Pyramidal Tracts - cytology; Pyramidal Tracts - metabolism; Quantification; Rats; Rats, Sprague-Dawley; Reproducibility of Results; Semi-automated; Serotonin - metabolism; Serotonin Agents - pharmacology; Software - supply & distribution; Axonal growth; Image analysis; Axon measurement; Semi-automated; Quantification; Axon detection
• ISSN: 0165-0270; 1872-678X
• DOI: 10.1016/j.jneumeth.2005.12.021

Current techniques used to quantify axons often rely upon manual quantification or potentially expensive commercially available programs for automated quantification. We describe a computerized method for the detection and quantification of axons in the rat CNS using readily available free software. Feature J, a java-based plug-in to the imaging software NIH Image J, faithfully detects linear structures such as axons in confocal or bright-field images using a Hessian-based algorithm. We validated the method by comparing values obtained by manual and automated analyses of axons induced to grow in response to neurotrophin over-expression in the rat spinal cord. We also demonstrated that the program can be used to quantify neurotrophin-induced growth of lesioned serotonergic axons in the rat cortex, where manual measurement would be impractical due to dense axonal growth. The use of this software suite provided faster and less biased quantification of labeled axons in comparison to manual measurements at no cost.