Generating Vectors for the Lattice Structures of Tubular and Conical Viral Capsids
Retrovirus capsid is a fullerene-like lattice consisting of capsid protein hexamers and pentamers. Mathematical models for the lattice structure help understand the underlying biological mechanisms in the formation of viral capsids. It is known that viral capsids could be categorized into three majo...
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Published in | Computational and Mathematical Biophysics Vol. 2; no. 1; pp. 128 - 140 |
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Abstract | Retrovirus capsid is a fullerene-like lattice consisting of capsid protein hexamers and pentamers.
Mathematical models for the lattice structure help understand the underlying biological mechanisms in the
formation of viral capsids. It is known that viral capsids could be categorized into three major types: icosahedron,
tube, and cone. While the model for icosahedral capsids is established and well-received, models
for tubular and conical capsids need further investigation. This paper proposes new models for the tubular
and conical capsids based on an extension of the Capser-Klug quasi-equivalence theory. In particular, two
and three generating vectors are used to characterize respectively the lattice structures of tubular and conical
capsids. Comparison with published HIV-1 data demonstrates a good agreement of our modeling results
with experimental data. |
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AbstractList | Retrovirus capsid is a fullerene-like lattice consisting of capsid protein hexamers and pentamers. Mathematical models for the lattice structure help understand the underlying biological mechanisms in the formation of viral capsids. It is known that viral capsids could be categorized into three major types: icosahedron, tube, and cone. While the model for icosahedral capsids is established and well-received, models for tubular and conical capsids need further investigation. This paper proposes new models for the tubular and conical capsids based on an extension of the Capser-Klug quasi-equivalence theory. In particular, two and three generating vectors are used to characterize respectively the lattice structures of tubular and conical capsids. Comparison with published HIV-1 data demonstrates a good agreement of our modeling results with experimental data. Retrovirus capsid is a fullerene-like lattice consisting of capsid protein hexamers and pentamers. Mathematical models for the lattice structure help understand the underlying biological mechanisms in the formation of viral capsids. It is known that viral capsids could be categorized into three major types: icosahedron, tube, and cone. While the model for icosahedral capsids is established and well-received, models for tubular and conical capsids need further investigation. This paper proposes new models for the tubular and conical capsids based on an extension of the Capser-Klug quasi-equivalence theory. In particular, two and three generating vectors are used to characterize respectively the lattice structures of tubular and conical capsids. Comparison with published HIV-1 data demonstrates a good agreement of our modeling results with experimental data. Abstract Retrovirus capsid is a fullerene-like lattice consisting of capsid protein hexamers and pentamers. Mathematical models for the lattice structure help understand the underlying biological mechanisms in the formation of viral capsids. It is known that viral capsids could be categorized into three major types: icosahedron, tube, and cone. While the model for icosahedral capsids is established and well-received, models for tubular and conical capsids need further investigation. This paper proposes new models for the tubular and conical capsids based on an extension of the Capser-Klug quasi-equivalence theory. In particular, two and three generating vectors are used to characterize respectively the lattice structures of tubular and conical capsids. Comparison with published HIV-1 data demonstrates a good agreement of our modeling results with experimental data. |
Author | Sadre-Marandi, Farrah Chen, Chaoping Liu, Jiangguo Tavener, Simon |
Author_xml | – sequence: 1 givenname: Farrah surname: Sadre-Marandi fullname: Sadre-Marandi, Farrah organization: Department of Mathematics, Colorado State University, Fort Collins, CO 80523-1874, USA – sequence: 2 givenname: Jiangguo surname: Liu fullname: Liu, Jiangguo email: liu@math.colostate.edu organization: Department of Mathematics, Colorado State University, Fort Collins, CO 80523-1874, USA – sequence: 3 givenname: Simon surname: Tavener fullname: Tavener, Simon organization: Department of Mathematics, Colorado State University, Fort Collins, CO 80523-1874, USA – sequence: 4 givenname: Chaoping surname: Chen fullname: Chen, Chaoping organization: Department of Biochemistry and Molecular Biology, Colorado State University, Fort Collins, CO 80523-1870, USA |
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Cites_doi | 10.1016/j.bpj.2010.02.051 10.1039/b815274h 10.1080/17486700802168106 10.1016/j.str.2005.09.010 10.1088/1478-3975/7/4/045003 10.1016/S0092-8674(00)81773-0 10.1529/biophysj.107.117473 10.1016/0042-6822(65)90319-3 10.1101/SQB.1962.027.001.005 10.1088/0957-4484/18/37/375705 10.1021/mp100225y |
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Snippet | Retrovirus capsid is a fullerene-like lattice consisting of capsid protein hexamers and pentamers.
Mathematical models for the lattice structure help... Retrovirus capsid is a fullerene-like lattice consisting of capsid protein hexamers and pentamers. Mathematical models for the lattice structure help... Abstract Retrovirus capsid is a fullerene-like lattice consisting of capsid protein hexamers and pentamers. Mathematical models for the lattice structure help... |
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StartPage | 128 |
SubjectTerms | 92C05 CA protein capsid cone hexamer HIV-1 icosahedron pentamer tube |
Title | Generating Vectors for the Lattice Structures of Tubular and Conical Viral Capsids |
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