Evolution of Castanea in North America: restriction‐site‐associated DNA sequencing and ecological modeling reveal a history of radiation, range shifts, and disease
Premise Although chestnuts and chinquapins are some of the best known and most widely loved of any plants in North America, relatively little genomic sequencing has been done, and much is still unknown about their evolution. Methods We used double‐digest restriction‐site‐associated DNA (ddRAD) seque...
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Published in | American journal of botany Vol. 108; no. 9; pp. 1692 - 1704 |
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Main Authors | , |
Format | Journal Article |
Language | English |
Published |
Columbus
Botanical Society of America, Inc
01.09.2021
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Subjects | |
Online Access | Get full text |
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Abstract | Premise
Although chestnuts and chinquapins are some of the best known and most widely loved of any plants in North America, relatively little genomic sequencing has been done, and much is still unknown about their evolution.
Methods
We used double‐digest restriction‐site‐associated DNA (ddRAD) sequencing data to infer the species‐level phylogeny for Castanea and assess the phylogeography of the North American species using samples collected from populations that span the full extent of the species’ ranges. We also constructed species distribution models using digitized herbarium specimens and observational data from field surveys.
Results
We identified strong population structure within Castanea dentata (American chestnut) that reflects a stepwise northern migration since the last glacial maximum. Our species distribution models further confirmed this scenario and matched closely with the Castanea fossil pollen record. We also found significant structure within the Castanea pumila lineage, most notably a genetic cluster that corresponds to the frequently recognized Castanea pumila var. ozarkensis.
Conclusions
The two North American Castanea species have contrasting patterns of population structure, but each is typical of plant phylogeography in North America. Within the C. pumila complex, we found novel genetic structure that provides new insights about C. pumila taxonomy. Our results also identified a series of distinctive populations that will be valuable in ongoing efforts to conserve and restore chestnuts and chinquapins in North America. |
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AbstractList | PREMISEAlthough chestnuts and chinquapins are some of the best known and most widely loved of any plants in North America, relatively little genomic sequencing has been done, and much is still unknown about their evolution. METHODSWe used double-digest restriction-site-associated DNA (ddRAD) sequencing data to infer the species-level phylogeny for Castanea and assess the phylogeography of the North American species using samples collected from populations that span the full extent of the species' ranges. We also constructed species distribution models using digitized herbarium specimens and observational data from field surveys. RESULTSWe identified strong population structure within Castanea dentata (American chestnut) that reflects a stepwise northern migration since the last glacial maximum. Our species distribution models further confirmed this scenario and matched closely with the Castanea fossil pollen record. We also found significant structure within the Castanea pumila lineage, most notably a genetic cluster that corresponds to the frequently recognized Castanea pumila var. ozarkensis. CONCLUSIONSThe two North American Castanea species have contrasting patterns of population structure, but each is typical of plant phylogeography in North America. Within the C. pumila complex, we found novel genetic structure that provides new insights about C. pumila taxonomy. Our results also identified a series of distinctive populations that will be valuable in ongoing efforts to conserve and restore chestnuts and chinquapins in North America. Premise Although chestnuts and chinquapins are some of the best known and most widely loved of any plants in North America, relatively little genomic sequencing has been done, and much is still unknown about their evolution. Methods We used double‐digest restriction‐site‐associated DNA (ddRAD) sequencing data to infer the species‐level phylogeny for Castanea and assess the phylogeography of the North American species using samples collected from populations that span the full extent of the species’ ranges. We also constructed species distribution models using digitized herbarium specimens and observational data from field surveys. Results We identified strong population structure within Castanea dentata (American chestnut) that reflects a stepwise northern migration since the last glacial maximum. Our species distribution models further confirmed this scenario and matched closely with the Castanea fossil pollen record. We also found significant structure within the Castanea pumila lineage, most notably a genetic cluster that corresponds to the frequently recognized Castanea pumila var. ozarkensis. Conclusions The two North American Castanea species have contrasting patterns of population structure, but each is typical of plant phylogeography in North America. Within the C. pumila complex, we found novel genetic structure that provides new insights about C. pumila taxonomy. Our results also identified a series of distinctive populations that will be valuable in ongoing efforts to conserve and restore chestnuts and chinquapins in North America. Premise Although chestnuts and chinquapins are some of the best known and most widely loved of any plants in North America, relatively little genomic sequencing has been done, and much is still unknown about their evolution. Methods We used double-digest restriction-site-associated DNA (ddRAD) sequencing data to infer the species-level phylogeny for Castanea and assess the phylogeography of the North American species using samples collected from populations that span the full extent of the species' ranges. We also constructed species distribution models using digitized herbarium specimens and observational data from field surveys. Results We identified strong population structure within Castanea dentata (American chestnut) that reflects a stepwise northern migration since the last glacial maximum. Our species distribution models further confirmed this scenario and matched closely with the Castanea fossil pollen record. We also found significant structure within the Castanea pumila lineage, most notably a genetic cluster that corresponds to the frequently recognized Castanea pumila var. ozarkensis. Conclusions The two North American Castanea species have contrasting patterns of population structure, but each is typical of plant phylogeography in North America. Within the C. pumila complex, we found novel genetic structure that provides new insights about C. pumila taxonomy. Our results also identified a series of distinctive populations that will be valuable in ongoing efforts to conserve and restore chestnuts and chinquapins in North America. Abstract Premise Although chestnuts and chinquapins are some of the best known and most widely loved of any plants in North America, relatively little genomic sequencing has been done, and much is still unknown about their evolution. Methods We used double‐digest restriction‐site‐associated DNA (ddRAD) sequencing data to infer the species‐level phylogeny for Castanea and assess the phylogeography of the North American species using samples collected from populations that span the full extent of the species’ ranges. We also constructed species distribution models using digitized herbarium specimens and observational data from field surveys. Results We identified strong population structure within Castanea dentata (American chestnut) that reflects a stepwise northern migration since the last glacial maximum. Our species distribution models further confirmed this scenario and matched closely with the Castanea fossil pollen record. We also found significant structure within the Castanea pumila lineage, most notably a genetic cluster that corresponds to the frequently recognized Castanea pumila var. ozarkensis . Conclusions The two North American Castanea species have contrasting patterns of population structure, but each is typical of plant phylogeography in North America. Within the C. pumila complex, we found novel genetic structure that provides new insights about C. pumila taxonomy. Our results also identified a series of distinctive populations that will be valuable in ongoing efforts to conserve and restore chestnuts and chinquapins in North America. |
Author | Fertakos, Matthew E. Spriggs, Elizabeth L. |
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Cites_doi | 10.1111/1755-0998.12471 10.2179/11-033 10.1093/sysbio/syy084 10.2307/2399112 10.1186/1471-2229-12-38 10.1016/S0277-3791(99)00093-1 10.1111/jbi.13029 10.1097/00010694-195102000-00012 10.1038/nmeth.4285 10.1111/ele.12853 10.1186/s12862-016-0624-1 10.1111/nph.14855 10.1111/2041-210X.12382 10.1046/j.1461-0248.2003.00477.x 10.1093/molbev/msx281 10.1073/pnas.1901656116 10.2307/2996972 10.1371/journal.pone.0037135 10.1534/genetics.113.160572 10.3732/ajb.1400118 10.1080/10635150701701083 10.1525/9780520932739 10.2307/2996487 10.1111/j.1365-294X.2004.02396.x 10.5962/bhl.title.130546 10.1002/ece3.3880 10.1890/02-4045 10.1111/ele.12110 10.1111/eva.12886 10.1101/gr.094052.109 10.2307/2424865 10.5962/p.253578 10.1093/oso/9780195113426.001.0001 10.1093/molbev/msh018 10.1111/jbi.13358 10.1093/molbev/msu300 10.1186/s12864-015-1942-1 10.2307/2992086 10.3732/ajb.1500160 10.1111/mec.12354 10.1046/j.1365-2699.2002.00767.x 10.1002/ajb2.1248 10.1016/S0065-2296(08)60011-7 10.1086/702267 10.1038/35016000 10.1111/j.1600-0587.2012.07348.x 10.1002/joc.1276 10.1186/1471-2229-9-51 10.1016/j.ympev.2006.07.022 10.1111/j.1365-294X.2010.04834.x 10.1038/sdata.2016.48 10.1007/s10592-005-9073-x 10.1093/bioinformatics/btu121 10.1007/s10021-018-0318-1 10.1007/s11295-012-0538-z 10.2307/1939835 10.1890/0012-9658(2006)87[2959:ACDFAM]2.0.CO;2 10.1101/gr.6.10.986 10.1111/j.1365-294X.2006.03061.x 10.5962/p.324752 10.1002/j.1537-2197.1980.tb07704.x 10.1890/04-1036 10.1080/10635150601146041 10.1111/evo.12609 10.1007/s11295-006-0036-2 10.1111/ddi.12278 |
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References | 2004; 21 2017; 1 2017; 2 1986; 73 2013; 22 2010; 19 1997; 87 1982; 109 2015; 102 2017; 0 2017; 44 2015; 33 2020; 13 1971 2018; 45 1991; 118 2012; 12 2013; 9 2005; 25 1980; 104 2004; 74 2018; 8 2000; 19 2013; 16 2006; 23 2019; 22 2018; 217 2019; 68 2003; 6 2000; 405 2017; 35 1995; 21 2019; 116 2007; 6 2009; 19 1996; 6 2015; 1 2017; 20 2015; 6 2015; 16 1980; 67 2006; 15 1998 2019; 226 2007 2005; 86 1950 2019; 106 2000; 155 1983; 70 2006; 2 2016; 16 1987; 19 2014; 196 2007; 55 2007; 56 2012; 77 1999 2017; 95 2015; 69 2019; 180 2013; 36 2002; 29 2016; 3 2017; 14 2006; 87 2021 1986; 67 1988; 69 2015; 21 2019 2009; 9 1908; 8 1929 2014; 30 2007; 43 2012; 7 2014; 72 2014; 101 e_1_2_9_75_1 Hijmans R. J. (e_1_2_9_39_1) 2017; 1 e_1_2_9_50_1 e_1_2_9_73_1 e_1_2_9_79_1 e_1_2_9_10_1 e_1_2_9_35_1 e_1_2_9_56_1 Goring S. (e_1_2_9_32_1) 2015; 1 e_1_2_9_77_1 e_1_2_9_12_1 e_1_2_9_33_1 Hudson D. H. (e_1_2_9_42_1) 2006; 23 e_1_2_9_54_1 e_1_2_9_71_1 Spriggs E. L. (e_1_2_9_74_1) 2021 e_1_2_9_16_1 e_1_2_9_37_1 e_1_2_9_58_1 e_1_2_9_18_1 Gailing O. (e_1_2_9_31_1) 2017; 95 e_1_2_9_41_1 e_1_2_9_64_1 Bivand R. (e_1_2_9_9_1) 2017; 0 e_1_2_9_20_1 e_1_2_9_62_1 e_1_2_9_22_1 e_1_2_9_45_1 e_1_2_9_68_1 Dode L. A. (e_1_2_9_21_1) 1908; 8 e_1_2_9_24_1 e_1_2_9_43_1 e_1_2_9_66_1 e_1_2_9_8_1 e_1_2_9_6_1 e_1_2_9_81_1 e_1_2_9_4_1 e_1_2_9_60_1 e_1_2_9_2_1 Faison E. K. (e_1_2_9_25_1) 2014; 72 Kubisiak T. L. (e_1_2_9_49_1) 1997; 87 e_1_2_9_26_1 e_1_2_9_28_1 e_1_2_9_47_1 Johnson G. P. (e_1_2_9_44_1) 1988; 69 e_1_2_9_30_1 e_1_2_9_53_1 e_1_2_9_51_1 e_1_2_9_72_1 e_1_2_9_11_1 e_1_2_9_34_1 e_1_2_9_57_1 e_1_2_9_13_1 e_1_2_9_55_1 e_1_2_9_76_1 e_1_2_9_70_1 Cannon C. H. (e_1_2_9_14_1) 2019; 226 e_1_2_9_15_1 e_1_2_9_17_1 e_1_2_9_36_1 e_1_2_9_59_1 e_1_2_9_19_1 e_1_2_9_63_1 e_1_2_9_40_1 e_1_2_9_61_1 e_1_2_9_46_1 e_1_2_9_23_1 e_1_2_9_65_1 e_1_2_9_7_1 e_1_2_9_80_1 e_1_2_9_5_1 e_1_2_9_82_1 e_1_2_9_3_1 Perkins M. T. (e_1_2_9_67_1) 2019 Hijmans R. J. (e_1_2_9_38_1) 2017; 2 Li J. T. (e_1_2_9_52_1) 2007; 6 Tidwell W. D. (e_1_2_9_78_1) 1998 e_1_2_9_27_1 e_1_2_9_48_1 e_1_2_9_69_1 e_1_2_9_29_1 |
References_xml | – volume: 70 start-page: 550 year: 1983 end-page: 563 article-title: Quarternary history of deciduous forests of eastern North America and Europe publication-title: Annals of the Missouri Botanical Garden – volume: 15 start-page: 4261 year: 2006 end-page: 4293 article-title: Comparative phylogeography of unglaciated eastern North America publication-title: Molecular Ecology – volume: 21 start-page: 125 year: 1995 end-page: 143 article-title: The pathogens and pests of chestnuts publication-title: Advances in Botanical Research – volume: 16 start-page: 540 year: 2016 end-page: 548 article-title: TESS3: fast inference of spatial population structure and genome scans for selection publication-title: Molecular Ecology Resources – volume: 23 start-page: 254 year: 2006 end-page: 267 article-title: Application of phylogenetic netowrks in evolutionary studies publication-title: Molecular Ecology and Evolution – volume: 16 start-page: 56 year: 2016 article-title: Post‐glacial phylogeography and evolu‐ tion of a wide‐ranging highly‐exploited keystone forest tree, eastern white pine ( ) in North America: single refugium, multiple routes publication-title: BMC Evolutionary Biology – volume: 116 start-page: 8431 year: 2019 end-page: 8436 article-title: Survival near ice sheet margins for some, but not all North American trees publication-title: Proceedings of the National Academy of Sciences, USA – volume: 87 start-page: 2959 year: 2006 end-page: 2966 article-title: A climatic driver for abrupt Mid‐Holocene vegetation dynamics and the hemlock decline in New England publication-title: Ecology – volume: 43 start-page: 49 year: 2007 end-page: 59 article-title: Molecular evidence for an Asian origin and a unique westward migration of species in the genus Castanea via Europe to North America publication-title: Molecular Phylogenetics and Evolution – volume: 13 start-page: 31 year: 2020 end-page: 47 article-title: Optimizing genomic selection for blight resistance in American chestnut backcross populations: a trade‐off with American chestnut ancestry implies resistance is polygenic publication-title: Evolutionary Applications – volume: 6 start-page: 986 year: 1996 end-page: 994 article-title: Real time quantitative PCR publication-title: Genome Research – volume: 72 start-page: 18 year: 2014 end-page: 32 article-title: Did American chestnut really dominate the eastern forest? publication-title: Arnoldia – volume: 86 start-page: 2088 year: 2005 end-page: 2098 article-title: Molecular indicators of tree migration capacity under rapid climate change publication-title: Ecology – volume: 35 start-page: 518 year: 2017 end-page: 522 article-title: UFBoot2: improving the ultrafast bootstrap approximation publication-title: Molecular Biology and Evolution – volume: 9 start-page: 107 year: 2013 end-page: 116 article-title: Comparative chloroplast and nuclear DNA analysis of Castanea species in the southern region of the USA publication-title: Tree Genetics & Genomes – year: 2021 article-title: Data from: Evolution of Castanea in North America: restriction‐site‐associated DNA sequencing and ecological modeling reveal a history of radiation, range shifts, and disease publication-title: Dryad Digital Repository – volume: 30 start-page: 1844 year: 2014 end-page: 1849 article-title: PyRAD: assembly of de novo RADseq loci for phylogenetic analyses publication-title: Bioinformatics – volume: 45 start-page: 1739 year: 2018 end-page: 1750 article-title: Genomic evidence of a widespread southern distribution during the Last Glacial Maximum for two eastern North American hickory species publication-title: Journal of Biogeography – year: 1971 – volume: 2 start-page: 6 year: 2017 end-page: 7 article-title: Raster: geographic data analysis and modeling publication-title: R package version – volume: 1 start-page: 1 year: 2017 end-page: 4 article-title: dismo: species distribution modeling publication-title: R package version – year: 1998 – volume: 405 start-page: 907 year: 2000 end-page: 913 article-title: The genetic legacy of the Quaternary ice ages publication-title: Nature – volume: 21 start-page: 236 year: 2015 end-page: 244 article-title: How global biodiversity hotspots may go unrecognized: lessons from the North American Coastal Plain publication-title: Diversity and Distributions – volume: 9 start-page: 51 year: 2009 article-title: Comparison of the transcriptomes of American chestnut (Castanea dentata) and Chinese chestnut (C. mollissima) in response to the chestnut blight infection publication-title: BMC Plant Biology – volume: 16 start-page: 773 year: 2013 end-page: 381 article-title: Climatic and biotic velocities for woody taxa distributions over the last 16,000 years in eastern North America publication-title: Ecology Letters – volume: 56 start-page: 879 year: 2007 end-page: 886 article-title: Species concepts and species delimitation publication-title: Systematic Biology – volume: 77 start-page: 186 year: 2012 end-page: 211 article-title: Phylogeny and phylogeography of North American Castanea Mill. (Fagaceae) using cpDNA suggests gene sharing in the Southern Appalachians publication-title: Castanea – volume: 226 start-page: 943 year: 2019 end-page: 946 article-title: The oak syngameon: more than the sum of its parts publication-title: New Phytologist – volume: 22 start-page: 995 year: 2019 end-page: 1006 article-title: Resurrecting the lost flames of American chestnut publication-title: Ecosystems – volume: 87 start-page: 751 year: 1997 end-page: 759 article-title: Molecular mapping of resistance to blight in an interspecific cross in the genus publication-title: Castanea. Host Genetics and Resistance – volume: 29 start-page: 1517 year: 2002 end-page: 1530 article-title: Chestnut: history and ecology of a transformed species publication-title: Journal of Biogeography – volume: 36 start-page: 27 year: 2013 end-page: 46 article-title: Collinearity: a review of methods to deal with it and a simulation study evaluating their performance publication-title: Ecography – volume: 44 start-page: 2188 year: 2017 end-page: 2198 article-title: Implications and alternatives of assigning climate data to geographical centroids publication-title: Journal of Biogeography – volume: 106 start-page: 389 year: 2019 end-page: 401 article-title: Phylogeny of a widespread eastern North American shrub, Viburnum lantanoides publication-title: American Journal of Botany – volume: 217 start-page: 939 year: 2018 end-page: 955 article-title: Widespread sampling biases in herbaria revealed from large‐scale digitization publication-title: New Phytologist – volume: 73 start-page: 228 year: 1986 end-page: 275 article-title: Evolution of the Fagaceae: the implications of foliar features publication-title: Annals of the Missouri Botanical Garden – volume: 101 start-page: 1332 year: 2014 end-page: 1349 article-title: Evolutionary trends and ecological differentiation in Early Cenozoic Fagaceae of western North America publication-title: American Journal of Botany – volume: 19 start-page: 489 year: 2000 end-page: 508 article-title: Vegetation and environment in eastern North America during the Last Glacial Maximum publication-title: Quarternary Science Reviews – volume: 16 start-page: 744 year: 2015 article-title: Substantial genome synteny preservation among woody angiosperm species: comparative genomics of Chinese chestnut (Castanea mollissima) and plant reference genomes publication-title: BMC Genomics – volume: 109 start-page: 457 year: 1982 end-page: 473 article-title: Ecological significance of American chestnut in the Holocene forests of Connecticut publication-title: Bulletin of the Torrey Botanical Club – year: 1929 – volume: 20 start-page: 1459 year: 2017 end-page: 1468 article-title: Ice ages leave genetic diversity ‘hotspots’ in Europe but not in Eastern North America publication-title: Ecology Letters – volume: 7 year: 2012 article-title: Double digest RADseq: an inexpensive method for de novo SNP discovery and genotyping in model and non‐model species publication-title: PLoS One – volume: 67 start-page: 1101 year: 1986 end-page: 1105 article-title: Pollen in laminated sediments provides evidence for a Mid‐Holocene forest pathogen outbreak publication-title: Ecology – year: 2007 – volume: 196 start-page: 973 year: 2014 end-page: 983 article-title: Fast and efficient estimation of individual ancestry coefficients publication-title: Genetics – volume: 19 start-page: 1655 year: 2009 end-page: 1664 article-title: Fast model‐based estimation of ancestry in unrelated individuals publication-title: Genome Research – volume: 8 start-page: 2632 year: 2018 end-page: 2644 article-title: Geographic range velocities and its association with phylogeny and life history traits in North American woody plants publication-title: Ecology and Evolution – volume: 33 start-page: 268 year: 2015 end-page: 274 article-title: IQ‐TREE: a fast and effective stochastic algorithm for estimating maximum likelihood phylogenies publication-title: Molecular Biology and Evolution – volume: 1 start-page: 1 issue: Art. 2 year: 2015 end-page: 17 article-title: neotoma: A programmatic interface to the Neotoma Paleoecological Database publication-title: Open Quaternary – volume: 6 start-page: 925 year: 2015 end-page: 929 article-title: LEA: an R package for landscape and eco‐ logical association studies publication-title: Methods in Ecology and Evolution – year: 1950 – volume: 6 start-page: 1064 year: 2007 end-page: 1071 article-title: An optimized mini‐preparation method to obtain high‐quality genomic DNA from mature leaves of sunflower publication-title: Genetics and Molecular Research – volume: 0 start-page: 3 year: 2017 end-page: 26 article-title: rgeos: interface to geometry engine‐open source (GEOS) publication-title: R package version – year: 2019 article-title: Genome‐wide sequence‐based genotyping supports a nonhybrid origin of Castanea alabamensis publication-title: BioRxiv – volume: 180 start-page: 253 year: 2019 end-page: 269 article-title: Reduced gene flow from mainland populations of Liriodendron tulipifera into the Florida Peninsula promotes diversification publication-title: International Journal of Plant Sciences – volume: 25 start-page: 1965 year: 2005 end-page: 1978 article-title: Very high resolution interpolated climate surfaces for global land areas publication-title: International Journal of Climatology – volume: 8 start-page: 140 year: 1908 end-page: 166 article-title: Notes dendrologiques. VI. Sur les chataigniers publication-title: Bulletin de la Société Dendrologique de France – volume: 2 start-page: 132 year: 2006 end-page: 139 article-title: Phylogeny of Castanea (Fagaceae) based on chloroplast trnT‐L‐F sequence data publication-title: Tree Genetics & Genomes – volume: 69 start-page: 721 year: 2015 end-page: 734 article-title: The effective found effect in a spatially expanding population publication-title: Evolution – volume: 118 start-page: 24 year: 1991 end-page: 32 article-title: The present distribution of chestnut in the upland forest communities of Virginia publication-title: Bulletin of the Torrey Botanical Club – volume: 55 start-page: 17 year: 2007 end-page: 24 article-title: Inconsistency of phylogenetic estimates from concatenated data under coalescence publication-title: Systematic Biology – volume: 155 start-page: 945 year: 2000 end-page: 959 article-title: Inference of population structure using multilocus genotype data publication-title: Genetics – volume: 14 start-page: 587 year: 2017 end-page: 589 article-title: ModelFinder: fast model selection for accurate phylogenetic estimates publication-title: Nature Methods – volume: 3 start-page: 1 year: 2016 end-page: 19 article-title: Downscaled and debiased climate simulations for North American from 21,000 years ago to 2100AD publication-title: Scientific Data – volume: 104 start-page: 264 year: 1980 end-page: 273 article-title: Recovery of an Appalachian forest following the chestnut blight publication-title: American Midland Naturalist – volume: 95 start-page: 799 year: 2017 end-page: 807 article-title: Genetic variation patterns of American chestnut populations at EST‐SSRs publication-title: NRC Research Press, Botany – volume: 22 start-page: 3124 year: 2013 end-page: 3140 article-title: Stacks: an analysis tool set for population genomics publication-title: Molecular Ecology – volume: 19 start-page: 4876 year: 2010 end-page: 4891 article-title: Range‐wide distribution of genetic diversity in North American tree Juglans cinerea: a product of range shifts, not ecological marginality or recent population decline publication-title: Molecular Ecology – volume: 68 start-page: 187 year: 2019 end-page: 203 article-title: Restriction‐site‐associated DNA sequencing reveals a cryptic Viburnum species on the North American Coastal Plain publication-title: Systematic Biology – volume: 12 start-page: 38 year: 2012 article-title: Chestnut resistance to the blight disease: insights from transcriptome analysis publication-title: BMC Plant Biology – volume: 6 start-page: 646 year: 2003 end-page: 653 article-title: Deterministic Plio‐Pleistocene extinctions in the European cool‐temperate tree flora publication-title: Ecology Letters – volume: 21 start-page: 255 year: 2004 end-page: 265 article-title: Neighbor‐net: an agglomerative method for the construction of phylogenetic networks publication-title: Molecular Biology and Evolution – volume: 74 start-page: 309 year: 2004 end-page: 334 article-title: Late‐Quarternary vegetation dynamics in North America: scaling from taxa to biomes publication-title: Ecological Monographs – volume: 102 start-page: 1342 year: 2015 end-page: 1355 article-title: Contrasting patterns of genetic diversity across the ranges of Pinus monticola and P. strobus: a comparison between eastern and western North American postglacial colonization histories publication-title: American Journal of Botany – volume: 19 start-page: 11 year: 1987 end-page: 15 article-title: Genomic plant DNA preparation from fresh tissue–CTAB method publication-title: Phytochemical Bulletin – volume: 67 start-page: 739 year: 1980 end-page: 757 article-title: Castaneoid inflorescences form the Middle Eocene of Tennessee and the diagnostic value of pollen (at the subfamily level) in Fagaceae publication-title: American Journal of Botany – volume: 69 start-page: 25 year: 1988 end-page: 49 article-title: Revision of Castanea sect. Balanocastanon (Fagaceae) publication-title: Journal of the Arnold Arboretum – year: 1999 – volume: 0 start-page: 3 year: 2017 ident: e_1_2_9_9_1 article-title: rgeos: interface to geometry engine‐open source (GEOS) publication-title: R package version contributor: fullname: Bivand R. – ident: e_1_2_9_16_1 doi: 10.1111/1755-0998.12471 – ident: e_1_2_9_71_1 doi: 10.2179/11-033 – ident: e_1_2_9_73_1 doi: 10.1093/sysbio/syy084 – ident: e_1_2_9_45_1 doi: 10.2307/2399112 – volume: 2 start-page: 6 year: 2017 ident: e_1_2_9_38_1 article-title: Raster: geographic data analysis and modeling publication-title: R package version contributor: fullname: Hijmans R. J. – year: 2019 ident: e_1_2_9_67_1 article-title: Genome‐wide sequence‐based genotyping supports a nonhybrid origin of Castanea alabamensis publication-title: BioRxiv contributor: fullname: Perkins M. T. – ident: e_1_2_9_6_1 doi: 10.1186/1471-2229-12-38 – ident: e_1_2_9_43_1 doi: 10.1016/S0277-3791(99)00093-1 – ident: e_1_2_9_66_1 doi: 10.1111/jbi.13029 – ident: e_1_2_9_11_1 doi: 10.1097/00010694-195102000-00012 – ident: e_1_2_9_47_1 doi: 10.1038/nmeth.4285 – ident: e_1_2_9_56_1 doi: 10.1111/ele.12853 – ident: e_1_2_9_82_1 doi: 10.1186/s12862-016-0624-1 – ident: e_1_2_9_19_1 doi: 10.1111/nph.14855 – volume-title: Common fossil plants of western North America year: 1998 ident: e_1_2_9_78_1 contributor: fullname: Tidwell W. D. – ident: e_1_2_9_29_1 doi: 10.1111/2041-210X.12382 – ident: e_1_2_9_77_1 doi: 10.1046/j.1461-0248.2003.00477.x – volume: 226 start-page: 943 year: 2019 ident: e_1_2_9_14_1 article-title: The oak syngameon: more than the sum of its parts publication-title: New Phytologist contributor: fullname: Cannon C. H. – ident: e_1_2_9_40_1 doi: 10.1093/molbev/msx281 – ident: e_1_2_9_8_1 doi: 10.1073/pnas.1901656116 – ident: e_1_2_9_76_1 doi: 10.2307/2996972 – ident: e_1_2_9_69_1 doi: 10.1371/journal.pone.0037135 – ident: e_1_2_9_30_1 doi: 10.1534/genetics.113.160572 – ident: e_1_2_9_10_1 doi: 10.3732/ajb.1400118 – ident: e_1_2_9_20_1 doi: 10.1080/10635150701701083 – year: 2021 ident: e_1_2_9_74_1 article-title: Data from: Evolution of Castanea in North America: restriction‐site‐associated DNA sequencing and ecological modeling reveal a history of radiation, range shifts, and disease publication-title: Dryad Digital Repository contributor: fullname: Spriggs E. L. – ident: e_1_2_9_28_1 doi: 10.1525/9780520932739 – ident: e_1_2_9_63_1 doi: 10.2307/2996487 – ident: e_1_2_9_70_1 doi: 10.1111/j.1365-294X.2004.02396.x – ident: e_1_2_9_54_1 doi: 10.5962/bhl.title.130546 – ident: e_1_2_9_35_1 doi: 10.1002/ece3.3880 – volume: 1 start-page: 1 issue: 2 year: 2015 ident: e_1_2_9_32_1 article-title: neotoma: A programmatic interface to the Neotoma Paleoecological Database publication-title: Open Quaternary contributor: fullname: Goring S. – ident: e_1_2_9_81_1 doi: 10.1890/02-4045 – ident: e_1_2_9_79_1 – ident: e_1_2_9_62_1 doi: 10.1111/ele.12110 – ident: e_1_2_9_80_1 doi: 10.1111/eva.12886 – ident: e_1_2_9_2_1 doi: 10.1101/gr.094052.109 – ident: e_1_2_9_57_1 doi: 10.2307/2424865 – volume: 72 start-page: 18 year: 2014 ident: e_1_2_9_25_1 article-title: Did American chestnut really dominate the eastern forest? publication-title: Arnoldia doi: 10.5962/p.253578 contributor: fullname: Faison E. K. – ident: e_1_2_9_33_1 doi: 10.1093/oso/9780195113426.001.0001 – ident: e_1_2_9_12_1 doi: 10.1093/molbev/msh018 – ident: e_1_2_9_7_1 doi: 10.1111/jbi.13358 – ident: e_1_2_9_60_1 doi: 10.1093/molbev/msu300 – ident: e_1_2_9_75_1 doi: 10.1186/s12864-015-1942-1 – ident: e_1_2_9_18_1 doi: 10.2307/2992086 – volume: 1 start-page: 1 year: 2017 ident: e_1_2_9_39_1 article-title: dismo: species distribution modeling publication-title: R package version contributor: fullname: Hijmans R. J. – volume: 6 start-page: 1064 year: 2007 ident: e_1_2_9_52_1 article-title: An optimized mini‐preparation method to obtain high‐quality genomic DNA from mature leaves of sunflower publication-title: Genetics and Molecular Research contributor: fullname: Li J. T. – ident: e_1_2_9_59_1 doi: 10.3732/ajb.1500160 – ident: e_1_2_9_15_1 doi: 10.1111/mec.12354 – ident: e_1_2_9_64_1 doi: 10.1046/j.1365-2699.2002.00767.x – ident: e_1_2_9_13_1 – volume: 87 start-page: 751 year: 1997 ident: e_1_2_9_49_1 article-title: Molecular mapping of resistance to blight in an interspecific cross in the genus publication-title: Castanea. Host Genetics and Resistance contributor: fullname: Kubisiak T. L. – ident: e_1_2_9_65_1 doi: 10.1002/ajb2.1248 – ident: e_1_2_9_4_1 doi: 10.1016/S0065-2296(08)60011-7 – volume: 8 start-page: 140 year: 1908 ident: e_1_2_9_21_1 article-title: Notes dendrologiques. VI. Sur les chataigniers publication-title: Bulletin de la Société Dendrologique de France contributor: fullname: Dode L. A. – ident: e_1_2_9_26_1 doi: 10.1086/702267 – ident: e_1_2_9_36_1 doi: 10.1038/35016000 – ident: e_1_2_9_22_1 doi: 10.1111/j.1600-0587.2012.07348.x – ident: e_1_2_9_37_1 doi: 10.1002/joc.1276 – ident: e_1_2_9_5_1 doi: 10.1186/1471-2229-9-51 – volume: 23 start-page: 254 year: 2006 ident: e_1_2_9_42_1 article-title: Application of phylogenetic netowrks in evolutionary studies publication-title: Molecular Ecology and Evolution contributor: fullname: Hudson D. H. – ident: e_1_2_9_51_1 doi: 10.1016/j.ympev.2006.07.022 – ident: e_1_2_9_41_1 doi: 10.1111/j.1365-294X.2010.04834.x – ident: e_1_2_9_55_1 doi: 10.1038/sdata.2016.48 – ident: e_1_2_9_23_1 doi: 10.1007/s10592-005-9073-x – ident: e_1_2_9_24_1 doi: 10.1093/bioinformatics/btu121 – ident: e_1_2_9_46_1 doi: 10.1007/s10021-018-0318-1 – ident: e_1_2_9_53_1 doi: 10.1007/s11295-012-0538-z – ident: e_1_2_9_3_1 doi: 10.2307/1939835 – ident: e_1_2_9_27_1 doi: 10.1890/0012-9658(2006)87[2959:ACDFAM]2.0.CO;2 – ident: e_1_2_9_34_1 doi: 10.1101/gr.6.10.986 – volume: 95 start-page: 799 year: 2017 ident: e_1_2_9_31_1 article-title: Genetic variation patterns of American chestnut populations at EST‐SSRs publication-title: NRC Research Press, Botany contributor: fullname: Gailing O. – ident: e_1_2_9_72_1 doi: 10.1111/j.1365-294X.2006.03061.x – volume: 69 start-page: 25 year: 1988 ident: e_1_2_9_44_1 article-title: Revision of Castanea sect. Balanocastanon (Fagaceae) publication-title: Journal of the Arnold Arboretum doi: 10.5962/p.324752 contributor: fullname: Johnson G. P. – ident: e_1_2_9_17_1 doi: 10.1002/j.1537-2197.1980.tb07704.x – ident: e_1_2_9_58_1 doi: 10.1890/04-1036 – ident: e_1_2_9_48_1 doi: 10.1080/10635150601146041 – ident: e_1_2_9_68_1 doi: 10.1111/evo.12609 – ident: e_1_2_9_50_1 doi: 10.1007/s11295-006-0036-2 – ident: e_1_2_9_61_1 doi: 10.1111/ddi.12278 |
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Although chestnuts and chinquapins are some of the best known and most widely loved of any plants in North America, relatively little genomic... Abstract Premise Although chestnuts and chinquapins are some of the best known and most widely loved of any plants in North America, relatively little genomic... Premise Although chestnuts and chinquapins are some of the best known and most widely loved of any plants in North America, relatively little genomic... PREMISEAlthough chestnuts and chinquapins are some of the best known and most widely loved of any plants in North America, relatively little genomic sequencing... |
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SubjectTerms | Biological evolution Castanea Castanea dentata Castanea pumila chestnut Deoxyribonucleic acid DNA DNA sequencing Ecological models Fagaceae Fossil pollen Genetic structure Geographical distribution Phylogeny Phylogeography Pollen Population structure Populations Radiation RADseq Species Taxonomy |
Title | Evolution of Castanea in North America: restriction‐site‐associated DNA sequencing and ecological modeling reveal a history of radiation, range shifts, and disease |
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