Evolution of Castanea in North America: restriction‐site‐associated DNA sequencing and ecological modeling reveal a history of radiation, range shifts, and disease

• Published in: American journal of botany Vol. 108; no. 9; pp. 1692 - 1704
• Main Authors: Spriggs, Elizabeth L., Fertakos, Matthew E.
• Format: Journal Article
• Language: English
• Published: Columbus Botanical Society of America, Inc 01.09.2021
• Subjects: Biological evolution; Castanea; Castanea dentata; Castanea pumila; chestnut; Deoxyribonucleic acid; DNA; DNA sequencing; Ecological models; Fagaceae; Fossil pollen; Genetic structure; Geographical distribution; Phylogeny; Phylogeography; Pollen; Population structure; Populations; Radiation; RADseq; Species; Taxonomy; North America
• ISSN: 0002-9122; 1537-2197
• DOI: 10.1002/ajb2.1726

Premise Although chestnuts and chinquapins are some of the best known and most widely loved of any plants in North America, relatively little genomic sequencing has been done, and much is still unknown about their evolution. Methods We used double‐digest restriction‐site‐associated DNA (ddRAD) sequencing data to infer the species‐level phylogeny for Castanea and assess the phylogeography of the North American species using samples collected from populations that span the full extent of the species’ ranges. We also constructed species distribution models using digitized herbarium specimens and observational data from field surveys. Results We identified strong population structure within Castanea dentata (American chestnut) that reflects a stepwise northern migration since the last glacial maximum. Our species distribution models further confirmed this scenario and matched closely with the Castanea fossil pollen record. We also found significant structure within the Castanea pumila lineage, most notably a genetic cluster that corresponds to the frequently recognized Castanea pumila var. ozarkensis. Conclusions The two North American Castanea species have contrasting patterns of population structure, but each is typical of plant phylogeography in North America. Within the C. pumila complex, we found novel genetic structure that provides new insights about C. pumila taxonomy. Our results also identified a series of distinctive populations that will be valuable in ongoing efforts to conserve and restore chestnuts and chinquapins in North America.