Characterization and kinetic analysis of enzyme–substrate recognition by three recombinant lactococcal tripeptidases

• Published in: Biochimica et biophysica acta Vol. 1748; no. 1; pp. 26 - 34
• Main Authors: Mori, Sumiko, Nirasawa, Satoru, Komba, Shiro, Kasumi, Takafumi
• Format: Journal Article
• Language: English
• Published: Netherlands Elsevier B.V 15.04.2005
• Subjects: Amino Acid Sequence; Aminopeptidases - chemistry; Aminopeptidases - genetics; Aminopeptidases - metabolism; Bacterial Proteins - chemistry; Bacterial Proteins - genetics; Bacterial Proteins - metabolism; Hydrogen-Ion Concentration; Kinetic analysis; Lactococcus lactis; Lactococcus lactis - enzymology; Models, Molecular; Molecular Sequence Data; Protein Structure, Tertiary; Recombinant PepT; Recombinant Proteins - chemistry; Recombinant Proteins - genetics; Recombinant Proteins - metabolism; Sequence Alignment; Substrate Specificity; Temperature; Tripeptidase; Lactococcus lactis; Kinetic analysis; Recombinant PepT; Substrate specificity; Tripeptidase
• ISSN: 1570-9639; 0006-3002; 1878-1454; 1878-2434
• DOI: 10.1016/j.bbapap.2004.12.001

Tripeptidases from Lactococcus lactis subsp. lactis (L9PepTR), L. lactis subsp. cremoris (L6PepTR), and L. lactis subsp. hordniae (hTPepTR) were cloned, overexpressed, purified, and characterized. Although these enzymes contained three to seven naturally occurring amino acid differences, both metal-binding and catalytic sites were highly conserved. The k cat values of hTPepTR were approximately 1.5- to 2-fold higher than those of L9PepTR, while, for L6PepTR, they were approximately 0.8- to 1.4-times the L9PepTR values. The K m of tripeptidase from subsp. lactis (L9PepTR) was considerably larger when glycine was the amino acid located at both the N- and C-terminus of the peptide substrate. In addition, the K m values of L9PepTR increased in the following order for YGG, LGG, FGG, SGG, and α-aminoisobutyrylglycylglycine, while the k cat/ K m decreased in the same order. These results suggest that the dipole moment and steric hindrance of the N-terminal amino acid side chain may be the most important factors controlling substrate specificity.