High-voltage electron microscopy tomography and structome analysis of unique spiral bacteria from the deep sea

• Published in: Microscopy Vol. 65; no. 4; p. 363
• Main Authors: Yamaguchi, Masashi, Yamada, Hiroyuki, Higuchi, Kimitaka, Yamamoto, Yuta, Arai, Shigeo, Murata, Kazuyoshi, Mori, Yuko, Furukawa, Hiromitsu, Uddin, Mohammad Shorif, Chibana, Hiroji
• Format: Journal Article
• Language: English
• Published: England 01.08.2016
• Subjects: Bacteria - classification; Bacteria - isolation & purification; Bacteria - ultrastructure; Hydrothermal Vents - microbiology; Microscopy, Electron, Transmission; Oceans and Seas; Tomography, X-Ray Computed; spiral bacteria; freeze-substitution fixation; deep-sea; high-voltage electron microscopy; tomography; structome
• ISSN: 2050-5701
• DOI: 10.1093/jmicro/dfw016

Structome analysis is a useful tool for identification of unknown microorganisms that cannot be cultured. In 2012, we discovered a unique deep-sea microorganism with a cell structure intermediate between those of prokaryotes and eukaryotes and described its features using freeze-substitution electron microscopy and structome analysis (quantitative and three-dimensional structural analysis of a whole cell at the electron microscopic level). We named it Myojin parakaryote Here we describe, using serial ultrathin sectioning and high-voltage electron microscopy tomography of freeze-substituted specimens, the structome analysis and 3D reconstruction of another unique spiral bacteria, found in the deep sea off the coast of Japan. The bacteria, which is named as 'Myojin spiral bacteria' after the discovery location and their morphology, had a total length of 1.768 ± 0.478 µm and a total diameter of 0.445 ± 0.050 µm, and showed either clockwise or counter-clockwise spiral. The cells had a cell surface membrane, thick fibrous layer, ribosomes and inner fibrous structures (most likely DNA). They had no flagella. The bacteria had 322 ± 119 ribosomes per cell. This ribosome number is only 1.2% of that of Escherichia coli and 19.3% of Mycobacterium tuberculosis and may reflect a very slow growth rate of this organism in the deep sea.