Chromosomal and phylogenetic context for conglutin genes in Arachis based on genomic sequence
Comparative genomic and cDNA sequence analysis of ara h 2, a major peanut allergen, and a related conglutin ara h 6 were performed in Arachis hypogaea L. and its putative progenitors, Arachis duranensis and Arachis ipaensis. The complete identity between sequences encoding Ara h 2 isoforms demonstra...
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| Published in | Molecular genetics and genomics : MGG Vol. 275; no. 6; pp. 578 - 592 |
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| Main Authors | , , , , , |
| Format | Journal Article |
| Language | English |
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Springer Nature B.V
01.06.2006
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| Abstract | Comparative genomic and cDNA sequence analysis of ara h 2, a major peanut allergen, and a related conglutin ara h 6 were performed in Arachis hypogaea L. and its putative progenitors, Arachis duranensis and Arachis ipaensis. The complete identity between sequences encoding Ara h 2 isoforms demonstrated that these are homeologous genes and represent orthologs from diploid ancestors. Three copies of ara h 6 were identified in A. hypogaea, one of them located in the A-genome and the other two in the B-genome. Expression analysis showed higher levels of ara h 2 transcripts compared with ara h 6. Dual-labeled genomic in situ hybridization permitted identification of two subgenomes, each of which contained one pair of ara h 2-ara h 6 signals localized by fluorescence in situ hybridization. Characterization of genomic clones showed close genetic linkage between Ara h 2.02 and one copy of ara h 6 in the B-genome. The physical linkage may have arisen by tandem duplication and divergence of an ancestral gene. A gene duplication event specific to the B-genome progenitor has resulted in ara h 6 paralogs. These data provide further evidence for progenitor relationships and genomic organization of the conglutin gene family in the genus Arachis and could contribute to the development of a hypoallergenic peanut. |
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| AbstractList | Comparative genomic and cDNA sequence analysis of ara h 2, a major peanut allergen, and a related conglutin ara h 6 were performed in Arachis hypogaea L. and its putative progenitors, Arachis duranensis and Arachis ipaensis. The complete identity between sequences encoding Ara h 2 isoforms demonstrated that these are homeologous genes and represent orthologs from diploid ancestors. Three copies of ara h 6 were identified in A. hypogaea, one of them located in the A-genome and the other two in the B-genome. Expression analysis showed higher levels of ara h 2 transcripts compared with ara h 6. Dual-labeled genomic in situ hybridization permitted identification of two subgenomes, each of which contained one pair of ara h 2-ara h 6 signals localized by fluorescence in situ hybridization. Characterization of genomic clones showed close genetic linkage between Ara h 2.02 and one copy of ara h 6 in the B-genome. The physical linkage may have arisen by tandem duplication and divergence of an ancestral gene. A gene duplication event specific to the B-genome progenitor has resulted in ara h 6 paralogs. These data provide further evidence for progenitor relationships and genomic organization of the conglutin gene family in the genus Arachis and could contribute to the development of a hypoallergenic peanut. Comparative genomic and cDNA sequence analysis of ara h 2, a major peanut allergen, and a related conglutin ara h 6 were performed in Arachis hypogaea L. and its putative progenitors, Arachis duranensis and Arachis ipaensis. The complete identity between sequences encoding Ara h 2 isoforms demonstrated that these are homeologous genes and represent orthologs from diploid ancestors. Three copies of ara h 6 were identified in A. hypogaea, one of them located in the A-genome and the other two in the B-genome. Expression analysis showed higher levels of ara h 2 transcripts compared with ara h 6. Dual-labeled genomic in situ hybridization permitted identification of two subgenomes, each of which contained one pair of ara h 2-ara h 6 signals localized by fluorescence in situ hybridization. Characterization of genomic clones showed close genetic linkage between Ara h 2.02 and one copy of ara h 6 in the B-genome. The physical linkage may have arisen by tandem duplication and divergence of an ancestral gene. A gene duplication event specific to the B-genome progenitor has resulted in ara h 6 paralogs. These data provide further evidence for progenitor relationships and genomic organization of the conglutin gene family in the genus Arachis and could contribute to the development of a hypoallergenic peanut.[PUBLICATION ABSTRACT] |
| Author | Akiyama, Yukio Fleming, Geraldine Ozias-Akins, Peggy Gallo, Maria Ramos, M Laura Chu, Ye |
| Author_xml | – sequence: 1 givenname: M Laura surname: Ramos fullname: Ramos, M Laura organization: Department of Horticulture, University of Georgia Tifton Campus, Tifton, GA, 31793, USA – sequence: 2 givenname: Geraldine surname: Fleming fullname: Fleming, Geraldine – sequence: 3 givenname: Ye surname: Chu fullname: Chu, Ye – sequence: 4 givenname: Yukio surname: Akiyama fullname: Akiyama, Yukio – sequence: 5 givenname: Maria surname: Gallo fullname: Gallo, Maria – sequence: 6 givenname: Peggy surname: Ozias-Akins fullname: Ozias-Akins, Peggy |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/16614814$$D View this record in MEDLINE/PubMed |
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| Snippet | Comparative genomic and cDNA sequence analysis of ara h 2, a major peanut allergen, and a related conglutin ara h 6 were performed in Arachis hypogaea L. and... |
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| SubjectTerms | Arachis Arachis - genetics Arachis hypogaea Base Sequence Blotting, Southern Chromosomes, Plant DNA, Plant Genes Genetics Genome, Plant In Situ Hybridization, Fluorescence Molecular Sequence Data Phylogeny Plant Proteins - genetics Sequence Homology, Nucleic Acid |
| Title | Chromosomal and phylogenetic context for conglutin genes in Arachis based on genomic sequence |
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