Association of IFNGR1 and IFNG genetic polymorphisms with the risk for pulmonary tuberculosis in the Chinese Tibetan population

• Published in: Oncotarget Vol. 8; no. 58; pp. 98417 - 98425
• Main Authors: He, Shumei, Wang, Bo, Zhu, Xikai, Chen, Zhengshuai, Chen, Junyu, Hua, Demi, Droma, Deji, Li, Wensheng, Yuan, Dongya, Jin, Tianbo
• Format: Journal Article
• Language: English
• Published: United States Impact Journals LLC 17.11.2017
• Subjects: Research Paper; pulmonary tuberculosis; haplotype; IFNG; single nucleotide polymorphisms; IFNGR1
• ISSN: 1949-2553; 1949-2553
• DOI: 10.18632/oncotarget.21413

Interferon-gamma (IFNG) and its receptor (IFNGR1) are principal genes that associated with tuberculosis. In the current study we aimed to explore the genetic association of polymorphisms of and with the risk of pulmonary tuberculosis (PTB) in the Chinese Tibetan population. We selected 467 PTB patients and 503 healthy controls to genotype 9 single nucleotide polymorphisms (SNPs). The unconditional logistic regression analysis was applied for assessing the associations, and the risk of PTB were evaluated by calculating the odds ratio (OR) and 95% confidence interval (CI). The results showed that mutants of rs9376268, rs1327475 and rs1327474 in played a protective role in the PTB risk under genotype, dominant and additive model ( <0.05). On the contrary, minor allele "A" of rs2069705 in significantly increased the risk of PTB under genotype, dominant and additive model ( <0.05). However, after Bonferroni's multiple adjustment was applied to our data, which level of significant was set at <0.0011 (0.05/45). Only variant of rs9376268 was significantly associated decrease the PTB susceptibility under additive model (OR=0.73, 95%CI=0.61-0.88, <0.001). Furthermore, in the haplotype analysis, we found that the haplotypes "C-G-G-A-C", "C-G-A-G-T" and "T-A-G-G-T" of rs9376267-rs9376268-rs1327475-rs7749390-rs1327474 block were extremely decreased the PTB risk ( <0.01), however, the haplotypes "C-G-G-A-T", "T-G-G-G-T" and "C-G-G-G-T" of the block were extremely increased the PTB risk ( <0.01). These results suggested that variants of may have a close relation with the PTB risk in Chinese Tibetan population.