Real-time assays with molecular beacons and other fluorescent nucleic acid hybridization probes

• Published in: Clinica chimica acta Vol. 363; no. 1; pp. 48 - 60
• Main Authors: Marras, Salvatore A.E., Tyagi, Sanjay, Kramer, Fred Russell
• Format: Journal Article
• Language: English
• Published: Netherlands Elsevier B.V 2006
• Subjects: Animals; Biological Assay - methods; Biological Assay - trends; DNA - metabolism; Fluorescence energy transfer; Fluorescent Dyes - chemistry; Fluorescent Dyes - metabolism; Fluorescent nucleic acid hybridization probes; Gene Amplification; Humans; Molecular beacons; Molecular Probe Techniques; Nucleic acid hybridization; Nucleic Acid Hybridization - methods; Oligonucleotide Probes - chemistry; Oligonucleotide Probes - metabolism; Real-time gene amplification assays; RNA - metabolism; Real-time gene amplification assays; Fluorescence energy transfer; Molecular beacons; Nucleic acid hybridization; Fluorescent nucleic acid hybridization probes
• ISSN: 0009-8981; 1873-3492
• DOI: 10.1016/j.cccn.2005.04.037

A number of formats for nucleic acid hybridization have been developed to identify DNA and RNA sequences that are involved in cellular processes and that aid in the diagnosis of genetic and infectious diseases. The introduction of hybridization probes with interactive fluorophore pairs has enabled the development of homogeneous hybridization assays for the direct identification of nucleic acids. A change in the fluorescence of these probes indicates the presence of a target nucleic acid, and there is no need to separate unbound probes from hybridized probes. The advantages of homogeneous hybridization assays are their speed and simplicity. In addition, homogeneous assays can be combined with nucleic acid amplification, enabling the detection of rare target nucleic acids. These assays can be followed in real time, providing quantitative determination of target nucleic acids over a broad range of concentrations.