Discovery of a potent and highly selective transforming growth factor β receptor-associated kinase 1 (TAK1) inhibitor by structure based drug design (SBDD)

• Published in: Bioorganic & medicinal chemistry Vol. 24; no. 18; pp. 4206 - 4217
• Main Authors: Muraoka, Terushige, Ide, Mitsuaki, Morikami, Kenji, Irie, Machiko, Nakamura, Mitsuaki, Miura, Takaaki, Kamikawa, Takayuki, Nishihara, Masamichi, Kashiwagi, Hirotaka
• Format: Journal Article
• Language: English
• Published: OXFORD Elsevier Ltd 15.09.2016; Elsevier
• Subjects: Animals; Asparagine - chemistry; Biochemistry & Molecular Biology; Chemistry; Chemistry, Medicinal; Chemistry, Organic; Crystallography, X-Ray; Drug Design; Enzyme Assays; Humans; Hydrogen Bonding; Inhibitor; Kinase selectivity; Life Sciences & Biomedicine; MAP Kinase Kinase Kinases - antagonists & inhibitors; Mice; Microsomes, Liver - drug effects; Microsomes, Liver - metabolism; Molecular Structure; Pharmacology & Pharmacy; Physical Sciences; Protein Kinase Inhibitors - chemical synthesis; Protein Kinase Inhibitors - chemistry; Protein Kinase Inhibitors - pharmacology; Pyrimidinones - chemical synthesis; Pyrimidinones - chemistry; Pyrimidinones - pharmacology; SBDD; Science & Technology; Serine - chemistry; Solubility; Structure-Activity Relationship; TAK1; Thiophenes - chemical synthesis; Thiophenes - chemistry; Thiophenes - pharmacology; Tyrosine - chemistry; SBDD; Inhibitor; TAK1; Kinase selectivity; EPOXYQUINOL-B; PROTEIN; LINKING TAK1; IL-1; KAPPA-B; SIGNAL-TRANSDUCTION; MAPKKK; PATHWAY; INFLAMMATION; OPTIMIZATION
• ISSN: 0968-0896; 1464-3391
• DOI: 10.1016/j.bmc.2016.07.006

[Display omitted] A novel thienopyrimidinone analog was discovered as a potent and highly selective TAK1 inhibitor using the SBDD approach. TAK1 plays a key role in inflammatory and immune signaling, so TAK1 is considered to be an attractive molecular target for the treatment of human diseases (inflammatory disease, cancer, etc.). After the hit compound had been obtained, our modifications successfully increased TAK1 inhibitory activity and solubility, but metabolic stability was still unsatisfactory. To improve metabolic stability, we conducted metabolic identification. Although the obtained metabolite was fortunately a potent TAK1 inhibitor, its kinase selectivity was low. Subsequently, to achieve high kinase selectivity, we used SBDD to follow two strategies: one targeting unique amino acid residues in TAK1, especially the combination of Ser111 and Asn114; the other decreasing the interaction with Tyr106 at the hinge position in TAK1. As expected, our designed compound showed an excellent kinase selectivity profile in both an in-house and a commercially available panel assay of over 420 kinases and also retained its potent TAK1 inhibitory activity (TAK1 IC50=11nM).