Identification of extremely rare mitochondrial disorders by whole exome sequencing

• Published in: Journal of human genetics Vol. 64; no. 11; pp. 1117 - 1125
• Main Authors: Seo, Go Hun, Oh, Arum, Kim, Eun Na, Lee, Yeonmi, Park, Jumi, Kim, Taeho, Lim, Young-Min, Kim, Gu-Hwan, Kim, Chong Jai, Yoo, Han-Wook, Kang, Eunju, Lee, Beom Hee
• Format: Journal Article
• Language: English
• Published: England Nature Publishing Group 01.11.2019
• Subjects: Adult; Alanine-tRNA Ligase - genetics; Ataxia; Brain - diagnostic imaging; Brain - pathology; Cardiomyopathy; Child; Defects; Deoxyribonucleic acid; DNA; DNA, Mitochondrial - genetics; Dysarthria - genetics; Dysarthria - physiopathology; Exome - genetics; Fibroblasts; Gait; Genetic counseling; Genetic screening; Genetics; Genomes; Heart; High-Throughput Nucleotide Sequencing; Humans; Hypertrophy; Hypertrophy, Left Ventricular - genetics; Hypertrophy, Left Ventricular - physiopathology; Intermediates; Lactic acid; Life sciences; Magnetic Resonance Imaging; Male; Medical records; Medical schools; Medicine; Mesencephalon; Mitochondria - genetics; Mitochondrial Diseases - diagnostic imaging; Mitochondrial Diseases - genetics; Mitochondrial Diseases - physiopathology; Mitochondrial DNA; Mitochondrial Proteins - genetics; Movement disorders; Mutation; Neuroimaging; Neurology; Ophthalmoplegia; Ophthalmoplegia - genetics; Ophthalmoplegia - physiopathology; Oxygen consumption; Patients; Pedigree; Peptide Elongation Factors - genetics; Pons; Pyruvic acid; Rare Diseases - diagnostic imaging; Rare Diseases - genetics; Rare Diseases - physiopathology; Ribonucleic acid; RNA; RNA-Binding Proteins - genetics; Seizures; Splicing; Stem cells; Tricarboxylic acid cycle; Ventricle; Whole Exome Sequencing
• ISSN: 1434-5161; 1435-232X
• DOI: 10.1038/s10038-019-0660-y

Whole exome sequencing (WES) is an effective tool for the genetic diagnosis of mitochondrial disorders due to various nuclear genetic defects. In this study, three patients affected by extremely rare mitochondrial disorders caused by nuclear genetic defects are described. The medical records of each patient were reviewed to obtain clinical symptoms, results of biochemical and imaging studies, and muscle biopsies. WES and massive parallel sequencing of whole mtDNA were performed for each patient. The oxygen consumption rate (OCR) and complex activity I and IV was measured. Patients 1 and 2 had exhibited global developmental delay and seizure since early infancy. Blood lactate, the lactate-to-pyruvate ratio, and urinary excretion of Krebs cycle intermediates were markedly elevated. Patient 1 also was noted for ophthalmoplegia. Patient 2 had left ventricular hypertrophy and ataxia. Patient 3 developed dysarthria, gait disturbance, and right-side weakness at age 29. Brain magnetic resonance imaging demonstrated abnormal signal intensity involving the bilateral thalami, midbrain, or pons. Based on WES, patient 1 had p.Glu415Gly and p.Arg484Trp variants in MTO1. In patient 2, p.Gln111ThrfsTer5 and RNA mis-splicing were identified in TSFM. Patient 3 carried p.Met151Thr and p.Met246Lys variants in AARS2. Skin fibroblasts of three patients exhibited decreased OCRs and complex 1 activity, and mitochondrial DNA was normal. These results demonstrate the utility of WES for identifying the genetic cause of extremely rare mitochondrial disorders, which has implications for genetic counseling.