Rapid and equipment‐free detection of Phytophthora capsici using lateral flow strip‐based recombinase polymerase amplification assay

• Published in: Letters in applied microbiology Vol. 69; no. 1; pp. 64 - 70
• Main Authors: Yu, J., Shen, D., Dai, T., Lu, X., Xu, H., Dou, D.
• Format: Journal Article
• Language: English
• Published: England Oxford University Press 01.07.2019
• Subjects: Amplification; Assaying; Deoxyribonucleic acid; Diagnostic software; Diagnostic systems; Disease control; DNA; Laboratories; pathogen detection; Phytophthora capsici; Primers; rapid DNA extraction; Recombinase; RPA; Strip; visual detection; RPA; visual detection; pathogen detection; Phytophthora capsici; rapid DNA extraction
• ISSN: 0266-8254; 1472-765X
• DOI: 10.1111/lam.13166

Phytophthora capsici is an important oomycete pathogen that causes devastating diseases in various crops. Methods for the rapid detection of P. capsici are important for disease control and eradication programmes. Here, we developed an assay based on lateral flow strip‐based recombinase polymerase amplification (LF‐RPA) for the rapid and equipment‐free detection of P. capsici. The specific primers and a probe were designed using the sequence of Ypt1, and the optimal assay conditions were 40°C for 20 min. The specificity of the assay was verified using closely related oomycetes and fungal species, and its detection limit was 10 pg of genomic DNA. In combination with a simple DNA extraction method, the LF‐RPA assay enabled detection of P. capsici in diseased pepper samples without specialized equipment within 30 min. Consequently, the LF‐RPA assay developed in this study enables rapid and equipment‐free detection of P. capsici and has potential for further development as a diagnostic kit for application in the field or in resource‐limited laboratories. Significance and Impact of the Study We developed a novel assay based on lateral flow strip‐based recombinase polymerase amplification (LF‐RPA) for the rapid and equipment‐free detection of Phytophthora capsici. In combination with a simple DNA extraction method, the LF‐RPA assay detected P. capsici in field samples without specialized equipment within 30 min. The assay has potential for further development as a diagnostic kit for application in the field or in resource‐limited laboratories. Significance and Impact of the Study: We developed a novel assay based on lateral flow strip‐based recombinase polymerase amplification (LF‐RPA) for the rapid and equipment‐free detection of Phytophthora capsici. In combination with a simple DNA extraction method, the LF‐RPA assay detected P. capsici in field samples without specialized equipment within 30 min. The assay has potential for further development as a diagnostic kit for application in the field or in resource‐limited laboratories.