Visual and rapid detection of Plesiomonas shigelloides using loop‐mediated isothermal amplification method

• Published in: Letters in applied microbiology Vol. 69; no. 6; pp. 411 - 416
• Main Authors: Liu, H., Yu, H., Peng, Z.Q., Yu, Y.Y., Xie, J.F., Yang, Y.
• Format: Journal Article
• Language: English
• Published: England Oxford University Press 01.12.2019
• Subjects: Animal diseases; Animals; Aquaculture; Aquatic animals; Calcein; Deoxyribonucleic acid; Diagnosis; DNA; DNA, Bacterial - analysis; Electrophoresis; Fish; Fishes - microbiology; Gel electrophoresis; Infections; Laboratories; loop‐mediated isothermal amplification (LAMP); Nucleic Acid Amplification Techniques - methods; nucleic acid dipstick assay; Pathogens; Plasmids; Plesiomonas - genetics; Plesiomonas - isolation & purification; Plesiomonas shigelloides; Polymerase Chain Reaction; Sensitivity and Specificity; Plesiomonas shigelloides; calcein; loop-mediated isothermal amplification (LAMP); nucleic acid dipstick assay; polymerase chain reaction
• ISSN: 0266-8254; 1472-765X
• DOI: 10.1111/lam.13225

Plesiomonas shigelloides is a common pathogen of aquatic animals and can pose a certain hazard to aquaculture. Here, we aimed to develop a loop‐mediated isothermal amplification (LAMP) method for the visual detection of P. shigelloides to aid the diagnosis of infections caused by this pathogen in aquatic animals. We used LAMP to amplify P. shigelloides DNA and combined it with calcein or nucleic acid dipstick assay (NADA) to visualize the amplified products. The optimal LAMP amplification temperature was 64°C, and the reaction lasted for 50 min. The limit of detection of recombinant plasmids containing the target gene using the LAMP method was 2·0 × 102 copies per μl, which is ten times higher than that using conventional polymerase chain reaction (PCR). LAMP products could be visualized without agarose gel electrophoresis. We tested 85 fish specimens using the established LAMP method and conventional PCR. The detection rate was 42·4% using the LAMP method and 34·1% using conventional PCR. Based on our results, the LAMP method combined with calcein or NADA is a rapid, specific, sensitive and accurate method for visual detection of fish‐derived P. shigelloides and can be used for the laboratory diagnosis of infections caused by it. Significance and Impact of the Study The combination of loop‐mediated isothermal amplification (LAMP) and calcein and nucleic acid dipstick assay (NADA) provided a rapid, specific and sensitive method for detecting Plesiomonas shigelloides, which is an important pathogen that causes diseases in aquatic animals worldwide. In the present study, the LAMP method showed a higher detection rate than conventional PCR for P. shigelloides using templates from 85 fish specimens. Thus, the LAMP method could be a reliable and convenient tool for diagnosing diseases in aquatic animals in the laboratory. Significance and Impact of the Study: The combination of loop‐mediated isothermal amplification (LAMP) and calcein and nucleic acid dipstick assay (NADA) provided a rapid, specific and sensitive method for detecting Plesiomonas shigelloides, which is an important pathogen that causes diseases in aquatic animals worldwide. In the present study, the LAMP method showed a higher detection rate than conventional PCR for P. shigelloides using templates from 85 fish specimens. Thus, the LAMP method could be a reliable and convenient tool for diagnosing diseases in aquatic animals in the laboratory.