Transcriptome Sequencing Identifies Potential Biomarker for White Matter Lesions Diagnosis in the Hypertension Population

• Published in: Neurochemical research Vol. 46; no. 8; pp. 2079 - 2088
• Main Authors: Wang, Wendi, Sun, Pei, Han, Fengyue, Wang, Chunjuan, Wang, Yongxiang, Wang, Xiang, Cong, Lin, Qu, Chuanqiang
• Format: Journal Article
• Language: English
• Published: New York Springer US 01.08.2021; Springer Nature B.V
• Subjects: Biochemistry; Bioinformatics; Biological activity; Biomarkers; Biomedical and Life Sciences; Biomedicine; Cell Biology; Diagnosis; Hypertension; Leukoaraiosis; Neurochemistry; Neurology; Neurosciences; Non-coding RNA; Original Paper; Pathogenesis; Population; Population studies; Risk analysis; Risk factors; Substantia alba; Transcriptomes; White matter lesions; Hypertension; Biomarkers; Diagnosis; LncRNAs
• ISSN: 0364-3190; 1573-6903; 1573-6903
• DOI: 10.1007/s11064-021-03346-6

Hypertension is confirmed to be one of the major risk factors of leukoaraiosis (LA). However, the pathogenesis of LA is not completely understood and there is no reliable indicator for the early diagnosis of LA in the hypertensive population. This study was designed to explore the potential biomarker for LA diagnosis in patients with hypertension. And it serves as the basis for the further study of LA mechanism. In this study, This study included 110 subjects, including 50 in the LA group and 60 in the control group. First, we performed transcriptome sequencing and quantitative PCR (qPCR) in four samples from the LA group, and three from the control group (seven people) to identify relevant long non-coding RNAs (long ncRNAs or lncRNA). The 103 samples were used for qPCR validation of relevant lncRNAs and the results were consistent with the sequencing. In-depth bioinformatics analysis were performed on differentially expressed (DE) lncRNAs and mRNAs. Go-functional enrichment analysis was performed on DE mRNAs. Some DE mRNA were enriched to biological processes associated with LA, And some lncRNAs related to DE mRNAs were traceable through cis/trans analysis, suggesting that they might be regulated in some way. Additionally, potential biomarkers for LA diagnosis in the hypertension population were identified via RT-qPCR and receive operating characteristic curve (ROC) analysis of lncRNA. One lncRNA, AC020928.1, has been demonstrated to be potential biomarkers for LA diagnosis in the hypertension population. The results of the present study indicated that the lncRNA may have an important role in the pathogenesis of LA and may be a novel target for further research. As the relationship between lncRNAs and LA is just beginning to be unraveled, their specific mechanisms require further investigation.